JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1S_chr12_7055718_7076032	0/0	c0006	2067	4	4	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0007	2067	3	3	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0008	2067	3	3	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0009	2067	2	2	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0010	2067	2	2	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0011	2067	1	1	0	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0012	2067	1	0	1	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0013	2067	1	0	0	1	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0014	2067	1	0	1	0	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0015	2067	1	0	0	1	0	0	copy fasta	C1S	chr12	7055718	7076032
C1S_chr12_7055718_7076032	0/0	c0016	2067	1	0	0	1	0	0	copy fasta	C1S	chr12	7055718	7076032
C1orf100_chr1_244347635_244394663	1/1	c0001	444	449	99	82	202	17	47	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	c0002	444	1	0	0	0	0	1	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	c0003	444	1	0	0	0	1	0	copy fasta	C1orf100	chr1	244347635	244394663
C1orf100_chr1_244347635_244394663	0/0	c0004	444	1	1	0	0	0	0	copy fasta	C1orf100	chr1	244347635	244394663
C1orf105_chr1_172415685_172473829	0/1	c0001	552	262	50	54	113	12	32	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	1/0	c0002	552	40	25	13	0	1	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	c0003	552	14	5	5	0	1	3	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	c0004	552	1	0	0	0	0	1	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	c0005	552	1	1	0	0	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	c0006	552	1	0	0	1	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf105_chr1_172415685_172473829	0/0	c0007	552	1	1	0	0	0	0	copy fasta	C1orf105	chr1	172415685	172473829
C1orf109_chr1_37676570_37695529	1/0	c0001	612	390	74	62	196	14	43	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	c0002	612	20	17	3	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/1	c0003	612	14	0	7	0	3	3	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	c0004	612	4	4	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	c0005	612	3	3	0	0	0	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf109_chr1_37676570_37695529	0/0	c0006	612	1	0	0	0	1	0	copy fasta	C1orf109	chr1	37676570	37695529
C1orf115_chr1_220685363_220704153	1/1	c0001	429	382	92	72	162	16	38	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	c0002	429	5	0	0	5	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	c0003	429	3	0	0	3	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	c0004	429	1	0	0	1	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	c0005	429	1	0	0	1	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	c0006	429	1	0	0	1	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf115_chr1_220685363_220704153	0/0	c0007	429	1	0	0	1	0	0	copy fasta	C1orf115	chr1	220685363	220704153
C1orf116_chr1_207013522_207037756	0/1	c0001	1806	322	50	68	158	16	29	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0002	1806	11	10	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0003	1806	8	7	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0004	1806	5	5	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0005	1806	5	5	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0006	1806	5	4	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0007	1806	5	5	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0008	1806	4	0	0	0	0	4	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	1/0	c0009	1806	4	0	2	0	0	1	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0010	1806	3	3	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0011	1806	2	0	0	2	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0012	1806	2	0	0	2	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0013	1806	2	0	0	0	0	2	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0014	1806	2	1	1	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0015	1806	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756