JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1orf116_chr1_207013522_207037756	0/0	c0016	1806	1	0	0	1	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0017	1806	1	0	0	1	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0018	1806	1	0	0	1	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0019	1806	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0020	1806	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0021	1806	1	0	0	1	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0022	1806	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0023	1806	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf116_chr1_207013522_207037756	0/0	c0024	1806	1	1	0	0	0	0	copy fasta	C1orf116	chr1	207013522	207037756
C1orf122_chr1_37802790_37814454	1/1	c0001	333	411	81	72	200	14	42	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	c0002	333	7	5	2	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	c0003	333	1	0	1	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf122_chr1_37802790_37814454	0/0	c0004	333	1	0	1	0	0	0	copy fasta	C1orf122	chr1	37802790	37814454
C1orf127_chr1_10941475_10987076	1/1	c0001	2472	170	17	43	72	12	24	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0002	2472	78	5	20	42	1	10	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0003	2472	41	31	4	2	1	3	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0004	2472	37	3	3	30	1	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0005	2472	11	3	1	7	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0006	2472	11	8	0	1	0	2	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0007	2472	9	9	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0008	2472	7	7	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0009	2472	4	0	0	4	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0010	2472	4	2	1	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0011	2472	3	1	1	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0012	2472	2	0	0	1	1	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0013	2472	2	2	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0014	2472	1	0	0	0	0	1	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0015	2472	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0016	2472	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0017	2472	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0018	2472	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0019	2472	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0020	2472	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0021	2472	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0022	2472	1	0	1	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0023	2472	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0024	2472	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0025	2472	1	0	0	1	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf127_chr1_10941475_10987076	0/0	c0026	2472	1	1	0	0	0	0	copy fasta	C1orf127	chr1	10941475	10987076
C1orf131_chr1_231218765_231246175	1/1	c0001	882	386	89	59	178	17	41	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	c0002	882	45	1	12	27	1	4	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	c0003	882	3	3	0	0	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	c0004	882	3	2	1	0	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	c0005	882	2	2	0	0	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	c0006	882	1	0	0	1	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	c0007	882	1	1	0	0	0	0	copy fasta	C1orf131	chr1	231218765	231246175
C1orf131_chr1_231218765_231246175	0/0	c0008	882	1	0	0	0	0	1	copy fasta	C1orf131	chr1	231218765	231246175
C1orf141_chr1_67087165_67139970	0/0	c0001	1203	217	67	41	80	10	19	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	c0002	1203	34	17	3	11	1	2	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	1/1	c0003	1203	16	2	3	4	5	0	copy fasta	C1orf141	chr1	67087165	67139970