JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1orf141_chr1_67087165_67139970	0/0	c0004	1203	13	0	2	11	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	c0005	1203	11	1	6	0	2	2	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	c0006	1203	6	5	1	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	c0007	1203	2	2	0	0	0	0	copy fasta	C1orf141	chr1	67087165	67139970
C1orf141_chr1_67087165_67139970	0/0	c0008	1203	1	0	0	0	0	1	copy fasta	C1orf141	chr1	67087165	67139970
C1orf146_chr1_92212915_92250813	1/1	c0001	543	269	73	60	92	12	30	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	c0002	543	8	8	0	0	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	c0003	543	1	0	0	1	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	c0004	543	1	0	0	1	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf146_chr1_92212915_92250813	0/0	c0005	543	1	1	0	0	0	0	copy fasta	C1orf146	chr1	92212915	92250813
C1orf159_chr1_1076823_1121089	1/1	c0001	597	263	73	47	102	8	31	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0002	597	54	15	7	16	6	10	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0003	597	2	0	0	2	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0004	597	2	2	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0005	597	1	1	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0006	597	1	0	0	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0007	597	1	1	0	0	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0008	597	1	0	0	1	0	0	copy fasta	C1orf159	chr1	1076823	1121089
C1orf159_chr1_1076823_1121089	0/0	c0009	597	1	0	0	0	0	1	copy fasta	C1orf159	chr1	1076823	1121089
C1orf162_chr1_111468984_111483512	1/1	c0001	393	399	84	64	194	13	42	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	c0002	393	71	14	12	34	3	8	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	c0003	393	5	0	0	5	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf162_chr1_111468984_111483512	0/0	c0004	393	1	0	0	1	0	0	copy fasta	C1orf162	chr1	111468984	111483512
C1orf167_chr1_11757193_11794585	0/0	c0001	4350	139	9	42	68	6	14	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/1	c0002	4350	42	0	10	15	3	13	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0003	4350	20	0	4	15	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0004	4350	11	5	4	0	1	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0005	4350	11	11	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0006	4350	8	0	1	7	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	1/0	c0007	4350	8	7	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0008	4350	8	8	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0009	4350	7	5	2	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0010	4350	7	2	0	1	1	3	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0011	4350	5	5	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0012	4350	4	4	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0013	4350	4	3	1	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0014	4350	4	4	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0015	4348	4	4	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0016	4350	3	0	0	2	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0017	4350	3	2	1	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0018	4350	3	3	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0019	4350	3	1	0	1	1	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0020	4350	3	0	2	0	1	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0021	4350	3	3	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0022	4350	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0023	4350	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0024	4350	2	2	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0025	4350	2	0	1	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0026	4350	2	2	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0027	4350	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585