JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1orf167_chr1_11757193_11794585	0/0	c0028	4350	2	0	0	2	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0029	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0030	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0031	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0032	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0033	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0034	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0035	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0036	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0037	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0038	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0039	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0040	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0041	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0042	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0043	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0044	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0045	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0046	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0047	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0048	4350	1	0	0	0	1	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0049	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0050	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0051	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0052	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0053	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0054	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0055	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0056	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0057	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0058	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0059	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0060	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0061	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0062	4350	1	1	0	0	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0063	4350	1	0	0	0	0	1	copy fasta	C1orf167	chr1	11757193	11794585
C1orf167_chr1_11757193_11794585	0/0	c0064	4350	1	0	0	1	0	0	copy fasta	C1orf167	chr1	11757193	11794585
C1orf174_chr1_3884133_3905272	0/1	c0001	732	302	45	49	164	12	31	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0002	732	55	26	10	5	5	9	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0003	732	41	0	11	29	0	1	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0004	732	16	6	0	10	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0005	732	6	4	2	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0006	732	5	5	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0007	732	4	4	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0008	732	4	4	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0009	732	2	0	0	0	0	2	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0010	732	1	0	0	0	0	1	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0011	732	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	1/0	c0012	732	1	0	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf174_chr1_3884133_3905272	0/0	c0013	732	1	1	0	0	0	0	copy fasta	C1orf174	chr1	3884133	3905272