JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1orf174_chr1_3884133_3905272	0/0	c0014	732	1	0	0	0	1	0	copy fasta	C1orf174	chr1	3884133	3905272
C1orf185_chr1_51097228_51153086	1/1	c0001	600	246	76	26	108	6	28	copy fasta	C1orf185	chr1	51097228	51153086
C1orf185_chr1_51097228_51153086	0/0	c0002	600	2	2	0	0	0	0	copy fasta	C1orf185	chr1	51097228	51153086
C1orf198_chr1_230832119_230873521	1/1	c0001	984	388	60	70	191	16	49	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	c0002	984	26	22	4	0	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	c0003	984	8	8	0	0	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	c0004	984	2	2	0	0	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	c0005	984	2	2	0	0	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	c0006	984	1	0	0	0	0	1	copy fasta	C1orf198	chr1	230832119	230873521
C1orf198_chr1_230832119_230873521	0/0	c0007	984	1	0	0	1	0	0	copy fasta	C1orf198	chr1	230832119	230873521
C1orf202_chr1_244724701_244736015	1/1	c0001	549	317	54	59	157	14	31	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0002	549	56	3	9	32	2	10	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0003	549	32	27	4	0	0	1	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0004	549	5	5	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0005	549	2	2	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0006	549	2	2	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0007	549	2	2	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0008	549	1	1	0	0	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf202_chr1_244724701_244736015	0/0	c0009	549	1	0	0	1	0	0	copy fasta	C1orf202	chr1	244724701	244736015
C1orf210_chr1_43276877_43290581	1/1	c0001	342	431	85	81	204	16	43	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	c0002	342	7	7	0	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	c0003	342	3	2	1	0	0	0	copy fasta	C1orf210	chr1	43276877	43290581
C1orf210_chr1_43276877_43290581	0/0	c0004	342	1	0	0	0	0	1	copy fasta	C1orf210	chr1	43276877	43290581
C1orf216_chr1_35708877_35723884	1/1	c0001	690	368	95	72	135	16	48	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	c0002	690	6	0	0	6	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	c0003	690	1	0	0	1	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf216_chr1_35708877_35723884	0/0	c0004	690	1	1	0	0	0	0	copy fasta	C1orf216	chr1	35708877	35723884
C1orf21_chr1_184382029_184634019	1/1	c0001	366	231	91	34	74	8	22	copy fasta	C1orf21	chr1	184382029	184634019
C1orf21_chr1_184382029_184634019	0/0	c0002	366	1	1	0	0	0	0	copy fasta	C1orf21	chr1	184382029	184634019
C1orf226_chr1_162376728_162391812	1/1	c0001	819	469	98	82	225	14	48	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	c0002	819	2	0	0	2	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	c0003	819	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	c0004	819	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf226_chr1_162376728_162391812	0/0	c0005	819	1	0	0	1	0	0	copy fasta	C1orf226	chr1	162376728	162391812
C1orf232_chr1_26159101_26173963	0/0	c0001	561	215	14	45	132	6	18	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	1/1	c0002	561	157	67	32	25	8	23	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	c0003	561	16	5	2	8	0	1	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	c0004	561	7	7	0	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	c0005	561	1	0	0	1	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	c0006	561	1	1	0	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	c0007	561	1	0	1	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	c0008	561	1	1	0	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf232_chr1_26159101_26173963	0/0	c0009	561	1	1	0	0	0	0	copy fasta	C1orf232	chr1	26159101	26173963
C1orf35_chr1_228095731_228108325	1/1	c0001	792	383	91	60	183	10	37	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	c0002	792	13	0	8	0	1	4	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	c0003	792	13	0	0	13	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	c0004	792	3	3	0	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	c0005	792	3	0	1	0	2	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	c0006	792	2	0	0	0	1	1	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	c0007	792	1	0	0	1	0	0	copy fasta	C1orf35	chr1	228095731	228108325