JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1orf35_chr1_228095731_228108325	0/0	c0008	792	1	0	0	1	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf35_chr1_228095731_228108325	0/0	c0009	792	1	0	1	0	0	0	copy fasta	C1orf35	chr1	228095731	228108325
C1orf43_chr1_154201720_154225590	1/1	c0001	762	363	87	65	162	10	37	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	c0002	762	7	5	2	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	c0003	762	1	1	0	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	c0004	762	1	0	1	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	c0005	762	1	1	0	0	0	0	copy fasta	C1orf43	chr1	154201720	154225590
C1orf43_chr1_154201720_154225590	0/0	c0006	762	1	0	0	0	0	1	copy fasta	C1orf43	chr1	154201720	154225590
C1orf50_chr1_42762249_42784491	1/1	c0001	600	405	87	70	189	14	43	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	c0002	600	5	5	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	c0003	600	3	3	0	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	c0004	600	2	1	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	c0005	600	1	0	0	1	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	c0006	600	1	0	0	0	0	1	copy fasta	C1orf50	chr1	42762249	42784491
C1orf50_chr1_42762249_42784491	0/0	c0007	600	1	0	1	0	0	0	copy fasta	C1orf50	chr1	42762249	42784491
C1orf52_chr1_85244953_85264662	1/1	c0001	549	319	78	53	145	13	28	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	c0002	549	97	13	22	55	1	6	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	c0003	549	18	0	5	11	0	2	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	c0004	549	1	0	1	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	c0005	549	1	0	0	1	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	c0006	549	1	0	1	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf52_chr1_85244953_85264662	0/0	c0007	549	1	1	0	0	0	0	copy fasta	C1orf52	chr1	85244953	85264662
C1orf53_chr1_197897630_197912362	1/0	c0001	438	225	46	27	125	4	22	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0002	438	139	34	35	53	5	12	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/1	c0003	438	62	3	17	29	5	7	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0004	438	6	6	0	0	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0005	438	3	3	0	0	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0006	438	2	0	0	0	0	2	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0007	438	1	0	0	0	0	1	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0008	438	1	0	0	1	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0009	438	1	1	0	0	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0010	438	1	0	0	1	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0011	438	1	0	1	0	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0012	438	1	0	0	1	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf53_chr1_197897630_197912362	0/0	c0013	438	1	1	0	0	0	0	copy fasta	C1orf53	chr1	197897630	197912362
C1orf54_chr1_150267790_150285916	1/1	c0001	396	428	92	74	198	16	46	copy fasta	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	c0002	396	3	3	0	0	0	0	copy fasta	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	c0003	396	2	0	2	0	0	0	copy fasta	C1orf54	chr1	150267790	150285916
C1orf54_chr1_150267790_150285916	0/0	c0004	396	1	1	0	0	0	0	copy fasta	C1orf54	chr1	150267790	150285916
C1orf56_chr1_151042751_151056420	1/1	c0001	1026	315	69	55	130	16	43	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	c0002	1026	10	10	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	c0003	1026	5	5	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	c0004	1026	5	4	1	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	c0005	1026	4	4	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	c0006	1026	2	2	0	0	0	0	copy fasta	C1orf56	chr1	151042751	151056420
C1orf56_chr1_151042751_151056420	0/0	c0007	1026	1	0	0	0	0	1	copy fasta	C1orf56	chr1	151042751	151056420
C1orf74_chr1_209774208_209789559	1/1	c0001	810	384	75	67	187	14	39	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	c0002	810	61	19	9	22	4	7	copy fasta	C1orf74	chr1	209774208	209789559
C1orf74_chr1_209774208_209789559	0/0	c0003	810	1	0	0	1	0	0	copy fasta	C1orf74	chr1	209774208	209789559
C1orf87_chr1_59985394_60078770	0/0	c0001	1641	143	37	24	68	2	12	copy fasta	C1orf87	chr1	59985394	60078770