JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1orf87_chr1_59985394_60078770	1/1	c0002	1641	123	24	17	62	5	13	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0003	1641	40	3	9	22	2	4	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0004	1641	21	0	6	13	0	2	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0005	1641	13	0	9	1	1	2	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0006	1641	8	0	0	7	0	1	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0007	1641	6	6	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0008	1641	4	4	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0009	1641	4	0	1	3	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0010	1641	3	0	0	3	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0011	1641	2	2	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0012	1641	2	1	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0013	1641	2	0	2	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0014	1641	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0015	1641	1	0	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0016	1641	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0017	1641	1	0	0	1	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0018	1641	1	0	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0019	1641	1	0	0	1	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0020	1641	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0021	1641	1	0	0	1	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0022	1641	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0023	1641	1	1	0	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf87_chr1_59985394_60078770	0/0	c0024	1641	1	0	1	0	0	0	copy fasta	C1orf87	chr1	59985394	60078770
C1orf94_chr1_34171907_34224131	1/1	c0001	1797	169	18	33	87	6	23	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0002	1797	36	8	9	17	2	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0003	1797	28	8	7	8	4	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0004	1797	27	25	2	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0005	1797	22	0	5	8	2	7	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0006	1797	15	10	2	0	0	3	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0007	1797	14	8	0	5	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0008	1797	8	8	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0009	1797	7	0	0	7	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0010	1797	6	0	2	4	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0011	1797	3	3	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0012	1797	2	1	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0013	1797	2	1	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0014	1797	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0015	1797	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0016	1797	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0017	1797	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0018	1797	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0019	1797	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0020	1797	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0021	1797	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0022	1797	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0023	1797	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0024	1797	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0025	1797	1	0	0	0	0	1	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0026	1797	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0027	1797	1	1	0	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131