Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
ACAN_chr15_88798436_88880353	0/0	c0093	7707	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0094	7878	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0095	7707	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0096	7479	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0097	7479	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0098	7821	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0099	7878	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0100	7821	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0101	7821	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0102	7764	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0103	7650	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0104	7593	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0105	7650	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0106	7650	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0107	7194	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0108	7650	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0109	7764	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0110	7308	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0111	7308	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0112	6966	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0113	7365	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0114	7707	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0115	7707	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0116	7593	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0117	7308	1	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0118	7194	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0119	7764	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0120	7764	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0121	7764	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0122	7707	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0123	7707	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0124	7707	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0125	7650	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0126	7707	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0127	7650	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0128	7707	1	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0129	7764	1	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0130	7764	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0131	7878	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0132	7764	1	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0133	7764	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0134	7536	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0135	7707	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0136	7593	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0137	7707	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0138	7650	1	0	0	1	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0139	7764	1	0	0	0	1	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0140	7764	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0141	7707	1	1	0	0	0	copy fasta	ACAN	chr15	88798436	88880353
ACAN_chr15_88798436_88880353	0/0	c0142	7707	1	0	1	0	0	copy fasta	ACAN	chr15	88798436	88880353