JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C1orf94_chr1_34171907_34224131	0/0	c0028	1797	1	0	1	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0029	1797	1	0	1	0	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C1orf94_chr1_34171907_34224131	0/0	c0030	1797	1	0	0	1	0	0	copy fasta	C1orf94	chr1	34171907	34224131
C20orf141_chr20_2809987_2820830	1/0	c0001	498	347	71	61	161	12	41	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	c0002	498	61	25	10	23	0	3	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/1	c0003	498	3	0	2	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	c0004	498	1	1	0	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	c0005	498	1	0	1	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf141_chr20_2809987_2820830	0/0	c0006	498	1	1	0	0	0	0	copy fasta	C20orf141	chr20	2809987	2820830
C20orf144_chr20_33657327_33668908	1/1	c0001	462	323	56	53	154	16	42	copy fasta	C20orf144	chr20	33657327	33668908
C20orf144_chr20_33657327_33668908	0/0	c0002	462	49	29	10	8	0	2	copy fasta	C20orf144	chr20	33657327	33668908
C20orf144_chr20_33657327_33668908	0/0	c0003	447	13	12	1	0	0	0	copy fasta	C20orf144	chr20	33657327	33668908
C20orf144_chr20_33657327_33668908	0/0	c0004	462	1	1	0	0	0	0	copy fasta	C20orf144	chr20	33657327	33668908
C20orf173_chr20_35521979_35534652	1/1	c0001	609	246	52	42	112	13	25	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0002	609	74	28	17	18	3	8	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0003	609	29	1	4	13	2	9	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0004	609	10	8	2	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0005	609	2	2	0	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0006	609	1	0	0	1	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0007	609	1	0	0	1	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0008	609	1	0	1	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0009	609	1	0	0	1	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf173_chr20_35521979_35534652	0/0	c0010	609	1	1	0	0	0	0	copy fasta	C20orf173	chr20	35521979	35534652
C20orf202_chr20_1198454_1214076	1/1	c0001	300	413	97	76	182	16	40	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	c0002	300	2	1	1	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf202_chr20_1198454_1214076	0/0	c0003	300	1	0	1	0	0	0	copy fasta	C20orf202	chr20	1198454	1214076
C20orf203_chr20_32626625_32678941	1/0	c0001	585	323	78	54	141	9	40	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/1	c0002	585	27	3	13	0	3	7	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	c0003	585	4	4	0	0	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	c0004	585	3	3	0	0	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	c0005	585	1	0	0	1	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	c0006	585	1	0	1	0	0	0	copy fasta	C20orf203	chr20	32626625	32678941
C20orf203_chr20_32626625_32678941	0/0	c0007	585	1	0	0	0	0	1	copy fasta	C20orf203	chr20	32626625	32678941
C20orf204_chr20_64031182_64044001	1/1	c0001	570	384	93	70	157	16	46	copy fasta	C20orf204	chr20	64031182	64044001
C20orf204_chr20_64031182_64044001	0/0	c0002	570	5	0	0	5	0	0	copy fasta	C20orf204	chr20	64031182	64044001
C20orf204_chr20_64031182_64044001	0/0	c0003	570	2	1	1	0	0	0	copy fasta	C20orf204	chr20	64031182	64044001
C20orf204_chr20_64031182_64044001	0/0	c0004	599	1	0	1	0	0	0	copy fasta	C20orf204	chr20	64031182	64044001
C20orf85_chr20_58145902_58166150	1/1	c0001	414	296	90	52	105	16	31	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	c0002	414	27	5	13	7	0	2	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	c0003	414	3	2	1	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	c0004	414	2	1	1	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	c0005	414	1	0	1	0	0	0	copy fasta	C20orf85	chr20	58145902	58166150
C20orf85_chr20_58145902_58166150	0/0	c0006	414	1	0	0	0	0	1	copy fasta	C20orf85	chr20	58145902	58166150
C20orf96_chr20_265863_295750	0/0	c0001	1092	147	53	20	63	3	8	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	1/1	c0002	1092	89	4	30	35	5	13	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0003	1092	83	4	20	49	3	7	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0004	1092	24	6	2	13	3	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0005	1092	18	2	2	9	1	4	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0006	1092	18	3	5	3	1	6	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0007	1092	13	10	1	0	0	2	copy fasta	C20orf96	chr20	265863	295750