JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C20orf96_chr20_265863_295750	0/0	c0008	1092	6	5	1	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0009	1092	5	5	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0010	1092	2	1	1	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0011	1092	1	0	0	1	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0012	1092	1	0	0	1	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0013	1092	1	0	0	1	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0014	1092	1	1	0	0	0	0	copy fasta	C20orf96	chr20	265863	295750
C20orf96_chr20_265863_295750	0/0	c0015	1092	1	0	0	1	0	0	copy fasta	C20orf96	chr20	265863	295750
C21orf58_chr21_46296130_46328870	1/1	c0001	969	241	57	42	95	13	32	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0002	972	97	12	28	40	5	12	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0003	969	16	16	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0004	972	3	3	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0005	969	3	0	0	0	0	3	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0006	969	3	0	0	3	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0007	969	3	3	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0008	972	2	0	0	1	0	1	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0009	969	2	2	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0010	969	2	0	0	2	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0011	969	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0012	969	1	0	1	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0013	969	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0014	972	1	0	0	1	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0015	969	1	1	0	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf58_chr21_46296130_46328870	0/0	c0016	969	1	0	1	0	0	0	copy fasta	C21orf58	chr21	46296130	46328870
C21orf62_chr21_32785673_32818703	0/0	c0001	660	206	42	47	88	6	23	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/1	c0002	660	92	49	16	12	2	12	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	c0003	660	2	0	1	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	c0004	660	1	1	0	0	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	c0005	660	1	0	0	0	0	1	copy fasta	C21orf62	chr21	32785673	32818703
C21orf62_chr21_32785673_32818703	0/0	c0006	660	1	0	0	1	0	0	copy fasta	C21orf62	chr21	32785673	32818703
C21orf91_chr21_17783974_17824356	1/0	c0001	894	170	69	33	43	3	21	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/1	c0002	894	126	19	21	66	7	12	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	c0003	894	96	1	20	57	4	14	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	c0004	894	15	0	0	15	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	c0005	894	3	3	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	c0006	894	2	2	0	0	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	c0007	894	1	0	0	0	0	1	copy fasta	C21orf91	chr21	17783974	17824356
C21orf91_chr21_17783974_17824356	0/0	c0008	894	1	0	0	1	0	0	copy fasta	C21orf91	chr21	17783974	17824356
C22orf15_chr22_23757990_23770863	1/1	c0001	447	397	83	78	182	13	39	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	c0002	447	24	5	1	8	2	8	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	c0003	447	6	5	1	0	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	c0004	447	2	2	0	0	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	c0005	447	1	1	0	0	0	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	c0006	447	1	0	0	0	1	0	copy fasta	C22orf15	chr22	23757990	23770863
C22orf15_chr22_23757990_23770863	0/0	c0007	447	1	0	0	0	0	1	copy fasta	C22orf15	chr22	23757990	23770863
C22orf23_chr22_37938050_37958601	0/1	c0001	654	263	62	51	116	11	22	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	1/0	c0002	654	84	1	26	38	6	12	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	c0003	654	18	18	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	c0004	654	5	4	0	0	1	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	c0005	654	2	2	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601