JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C22orf23_chr22_37938050_37958601	0/0	c0006	654	1	0	1	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf23_chr22_37938050_37958601	0/0	c0007	654	1	1	0	0	0	0	copy fasta	C22orf23	chr22	37938050	37958601
C22orf31_chr22_29053672_29066831	1/0	c0001	873	201	37	30	111	4	18	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/1	c0002	873	173	36	37	67	9	23	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0003	873	44	0	7	35	0	2	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0004	873	25	12	2	9	0	2	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0005	873	17	9	3	1	3	1	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0006	873	4	0	0	4	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0007	873	3	0	0	3	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0008	873	1	0	1	0	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0009	873	1	0	0	1	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0010	873	1	0	0	1	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0011	873	1	1	0	0	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf31_chr22_29053672_29066831	0/0	c0012	870	1	1	0	0	0	0	copy fasta	C22orf31	chr22	29053672	29066831
C22orf39_chr22_19435886_19452711	1/1	c0001	318	412	87	72	205	10	36	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	c0002	318	4	0	0	0	0	4	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	c0003	318	2	2	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	c0004	318	1	0	0	1	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf39_chr22_19435886_19452711	0/0	c0005	318	1	1	0	0	0	0	copy fasta	C22orf39	chr22	19435886	19452711
C22orf42_chr22_32144006_32164303	1/0	c0001	756	176	9	43	99	7	17	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0002	756	144	34	26	64	3	17	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/1	c0003	756	18	14	1	1	0	1	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0004	756	11	1	4	0	3	3	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0005	756	11	1	1	3	1	5	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0006	756	10	8	0	2	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0007	756	9	8	1	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0008	756	4	3	0	0	0	1	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0009	756	3	2	1	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0010	756	2	2	0	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0011	756	2	1	1	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0012	756	2	2	0	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0013	756	2	0	0	0	0	2	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0014	756	1	0	0	1	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0015	756	1	0	0	1	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0016	756	1	0	0	1	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C22orf42_chr22_32144006_32164303	0/0	c0017	756	1	1	0	0	0	0	copy fasta	C22orf42	chr22	32144006	32164303
C2CD2L_chr11_119102344_119123544	1/1	c0001	2121	325	86	59	139	13	26	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0002	2121	57	0	5	35	1	16	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0003	2121	3	3	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0004	2121	2	0	0	2	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0005	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0006	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0007	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0008	2121	1	1	0	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0009	2121	1	0	1	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0010	2121	1	0	1	0	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0011	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0012	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0013	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2L_chr11_119102344_119123544	0/0	c0014	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544