JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2CD2L_chr11_119102344_119123544	0/0	c0015	2121	1	0	0	1	0	0	copy fasta	C2CD2L	chr11	119102344	119123544
C2CD2_chr21_41880112_41959018	0/1	c0001	2091	106	4	22	44	12	23	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0002	2091	90	4	28	49	2	7	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0003	2091	80	18	6	50	3	3	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0004	2091	15	15	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0005	2091	10	7	2	0	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	1/0	c0006	2091	10	3	1	2	0	3	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0007	2091	8	6	2	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0008	2091	7	7	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0009	2091	6	0	0	5	0	1	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0010	2091	6	0	2	0	0	4	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0011	2091	5	5	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0012	2091	5	3	2	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0013	2091	4	0	1	3	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0014	2091	4	4	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0015	2091	4	2	2	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0016	2091	3	0	3	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0017	2091	3	3	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0018	2091	3	2	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0019	2091	2	0	0	2	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0020	2091	2	0	0	2	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0021	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0022	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0023	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0024	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0025	2091	1	0	0	0	1	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0026	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0027	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0028	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0029	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0030	2091	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0031	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0032	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0033	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0034	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0035	2091	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0036	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0037	2091	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0038	2091	1	0	0	1	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0039	2091	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0040	2091	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0041	2091	1	0	1	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0042	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD2_chr21_41880112_41959018	0/0	c0043	2091	1	1	0	0	0	0	copy fasta	C2CD2	chr21	41880112	41959018
C2CD3_chr11_74007718_74176002	1/1	c0001	7062	77	5	14	41	4	11	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0002	7062	56	1	5	40	3	7	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0003	7062	49	15	16	6	6	6	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0004	7062	20	19	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0005	7062	19	0	2	17	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0006	7062	12	7	3	0	0	2	copy fasta	C2CD3	chr11	74007718	74176002