JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2CD3_chr11_74007718_74176002	0/0	c0007	7062	8	0	1	5	0	2	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0008	7062	7	7	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0009	7062	7	7	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0010	7062	6	1	0	4	0	1	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0011	7062	6	0	0	6	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0012	7062	5	5	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0013	7062	3	3	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0014	7062	3	0	1	0	0	2	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0015	7062	3	3	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0016	7062	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0017	7062	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0018	7062	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0019	7062	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0020	7062	2	2	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0021	7062	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0022	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0023	7062	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0024	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0025	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0026	7062	1	0	0	0	0	1	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0027	7062	1	0	0	0	0	1	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0028	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0029	7062	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0030	7062	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0031	7062	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0032	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0033	7062	1	0	0	0	1	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0034	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0035	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0036	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0037	7062	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0038	7062	1	0	0	0	0	1	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0039	7062	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0040	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0041	7062	1	0	0	1	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0042	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0043	7062	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0044	7062	1	0	1	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0045	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0046	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD3_chr11_74007718_74176002	0/0	c0047	7062	1	1	0	0	0	0	copy fasta	C2CD3	chr11	74007718	74176002
C2CD4A_chr15_62061977_62075917	1/1	c0001	1110	386	79	71	185	18	31	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	c0002	1110	7	3	3	0	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	c0003	1110	6	0	0	6	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	c0004	1110	6	6	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	c0005	1110	2	2	0	0	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	c0006	1110	1	0	0	0	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	c0007	1110	1	0	0	1	0	0	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4A_chr15_62061977_62075917	0/0	c0008	1110	1	0	0	0	0	1	copy fasta	C2CD4A	chr15	62061977	62075917
C2CD4B_chr15_62158535_62170285	0/0	c0001	1095	248	50	46	118	10	24	copy fasta	C2CD4B	chr15	62158535	62170285