JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2CD4B_chr15_62158535_62170285	1/0	c0002	1095	118	15	15	75	1	11	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/1	c0003	1095	50	31	10	0	1	7	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0004	1095	5	1	1	0	0	3	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0005	1095	3	0	0	3	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0006	1095	1	0	0	0	0	1	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0007	1095	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0008	1095	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0009	1095	1	0	0	0	1	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0010	1095	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0011	1095	1	1	0	0	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0012	1095	1	0	0	1	0	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4B_chr15_62158535_62170285	0/0	c0013	1095	1	0	0	0	1	0	copy fasta	C2CD4B	chr15	62158535	62170285
C2CD4C_chr19_400445_414147	0/1	c0001	1266	195	50	46	63	6	29	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	1/0	c0002	1266	85	10	8	55	2	9	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0003	1267	12	1	8	3	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0004	1266	9	9	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0005	1267	6	2	2	2	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0006	1266	2	2	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0007	1266	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0008	1266	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0009	1266	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0010	1266	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0011	1266	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0012	1266	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0013	1266	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0014	1266	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0015	1266	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0016	1266	1	1	0	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0017	1268	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0018	1267	1	0	0	1	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4C_chr19_400445_414147	0/0	c0019	1266	1	0	1	0	0	0	copy fasta	C2CD4C	chr19	400445	414147
C2CD4D_chr1_151832818_151844820	0/1	c0001	1062	398	73	76	184	17	47	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	1/0	c0002	1062	16	15	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0003	1062	6	0	0	6	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0004	1062	6	0	6	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0005	1062	3	3	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0006	1062	2	2	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0007	1062	1	1	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0008	1062	1	1	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0009	1062	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0010	1062	1	0	0	0	1	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0011	1062	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0012	1062	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0013	1062	1	0	1	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0014	1062	1	0	0	1	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0015	1062	1	0	1	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0016	1062	1	0	0	0	0	1	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD4D_chr1_151832818_151844820	0/0	c0017	1062	1	1	0	0	0	0	copy fasta	C2CD4D	chr1	151832818	151844820
C2CD5_chr12_22443583_22549542	0/1	c0001	3156	112	57	24	10	3	17	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	1/0	c0002	3156	61	17	14	18	3	8	copy fasta	C2CD5	chr12	22443583	22549542