JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2CD5_chr12_22443583_22549542	0/0	c0003	3156	15	13	2	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	c0004	3156	9	0	0	8	0	1	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	c0005	3156	1	0	0	1	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	c0006	3156	1	1	0	0	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD5_chr12_22443583_22549542	0/0	c0007	3156	1	0	0	1	0	0	copy fasta	C2CD5	chr12	22443583	22549542
C2CD6_chr2_201482421_201624178	0/1	c0001	5463	112	14	18	61	4	14	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0002	5463	84	22	23	24	4	11	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0003	5463	11	7	3	0	1	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0004	5463	6	6	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0005	5463	5	5	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0006	5463	5	4	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0007	5463	5	4	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0008	5463	3	2	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0009	5463	3	3	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0010	5463	2	2	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0011	5463	2	0	0	2	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0012	5463	2	0	2	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0013	5463	2	1	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0014	5463	2	2	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	1/0	c0015	5463	2	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0016	5463	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0017	5463	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0018	5463	1	0	0	0	1	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0019	5463	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0020	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0021	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0022	5463	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0023	5463	1	0	0	0	0	1	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0024	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0025	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0026	5463	1	0	0	0	0	1	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0027	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0028	5463	1	0	0	0	0	1	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0029	5463	1	0	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0030	5463	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0031	5463	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0032	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0033	5463	1	0	0	1	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0034	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0035	5463	1	0	1	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0036	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0037	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0038	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2CD6_chr2_201482421_201624178	0/0	c0039	5463	1	1	0	0	0	0	copy fasta	C2CD6	chr2	201482421	201624178
C2_chr6_31922717_31950672	0/1	c0001	2259	332	72	65	151	15	28	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0002	2259	36	15	8	4	2	7	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0003	2259	7	0	3	2	0	2	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0004	2259	7	0	1	6	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0005	2248	2	0	1	0	1	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0006	2259	2	0	0	2	0	0	copy fasta	C2	chr6	31922717	31950672