JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2_chr6_31922717_31950672	0/0	c0007	2259	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0008	2259	1	0	0	1	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0009	2259	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0010	2259	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0011	2259	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0012	2259	1	0	0	0	0	1	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0013	2259	1	0	0	1	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0014	2259	1	1	0	0	0	0	copy fasta	C2	chr6	31922717	31950672
C2_chr6_31922717_31950672	0/0	c0015	2259	1	0	0	1	0	0	copy fasta	C2	chr6	31922717	31950672
C2orf15_chr2_99136707_99156669	1/1	c0001	276	410	94	77	179	14	44	copy fasta	C2orf15	chr2	99136707	99156669
C2orf15_chr2_99136707_99156669	0/0	c0002	276	4	0	3	1	0	0	copy fasta	C2orf15	chr2	99136707	99156669
C2orf16_chr2_27532386_27587722	0/0	c0001	16167	79	3	19	49	3	5	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0002	16167	68	1	7	44	4	12	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	1/0	c0003	16167	55	8	14	12	7	13	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0004	16167	10	0	0	10	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0005	16167	9	6	3	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0006	16167	8	6	2	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0007	16167	7	6	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0008	16167	5	5	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0009	16167	4	0	0	3	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0010	16167	4	3	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0011	16167	4	0	0	4	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0012	16167	3	3	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0013	16167	3	3	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0014	16167	3	3	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/1	c0015	16167	3	0	0	0	0	2	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0016	16167	3	0	0	3	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0017	16167	3	3	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0018	16167	3	0	0	3	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0019	16167	2	0	0	2	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0020	16143	2	2	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0021	16167	2	2	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0022	16167	2	2	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0023	16167	2	1	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0024	16167	2	2	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0025	16167	2	0	0	0	2	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0026	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0027	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0028	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0029	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0030	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0031	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0032	16191	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0033	16167	1	0	0	0	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0034	16167	1	0	0	0	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0035	16143	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0036	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0037	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0038	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0039	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722