JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2orf16_chr2_27532386_27587722	0/0	c0040	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0041	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0042	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0043	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0044	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0045	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0046	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0047	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0048	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0049	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0050	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0051	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0052	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0053	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0054	16167	1	0	0	0	0	1	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0055	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0056	16167	1	0	1	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0057	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0058	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0059	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0060	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0061	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0062	16167	1	0	0	1	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf16_chr2_27532386_27587722	0/0	c0063	16167	1	1	0	0	0	0	copy fasta	C2orf16	chr2	27532386	27587722
C2orf42_chr2_70144885_70196019	1/1	c0001	1725	276	89	38	115	5	27	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0002	1725	35	0	18	14	0	3	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0003	1726	12	1	2	9	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0004	1725	6	1	4	0	1	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0005	1725	5	4	1	0	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0006	1725	4	0	0	4	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0007	1726	2	0	2	0	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0008	1725	1	0	0	1	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0009	1726	1	0	0	1	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0010	1725	1	0	1	0	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0011	1725	1	0	0	1	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0012	1725	1	0	0	1	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf42_chr2_70144885_70196019	0/0	c0013	1725	1	1	0	0	0	0	copy fasta	C2orf42	chr2	70144885	70196019
C2orf49_chr2_105332540_105354211	1/0	c0001	699	367	82	52	181	11	40	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/1	c0002	699	25	1	11	9	2	1	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	c0003	699	10	1	6	0	2	1	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	c0004	699	4	4	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	c0005	699	3	3	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	c0006	699	2	0	1	0	1	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	c0007	699	2	0	0	0	0	2	copy fasta	C2orf49	chr2	105332540	105354211
C2orf49_chr2_105332540_105354211	0/0	c0008	699	1	1	0	0	0	0	copy fasta	C2orf49	chr2	105332540	105354211
C2orf50_chr2_11128128_11156317	1/1	c0001	489	371	83	76	154	12	44	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	c0002	489	3	3	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	c0003	489	3	3	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	c0004	489	2	0	0	2	0	0	copy fasta	C2orf50	chr2	11128128	11156317
C2orf50_chr2_11128128_11156317	0/0	c0005	489	1	1	0	0	0	0	copy fasta	C2orf50	chr2	11128128	11156317