JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2orf66_chr2_196799417_196814355	1/1	c0001	303	306	90	72	100	8	34	copy fasta	C2orf66	chr2	196799417	196814355
C2orf68_chr2_85600254_85617066	1/1	c0001	501	373	83	72	170	10	36	copy fasta	C2orf68	chr2	85600254	85617066
C2orf68_chr2_85600254_85617066	0/0	c0002	501	3	3	0	0	0	0	copy fasta	C2orf68	chr2	85600254	85617066
C2orf69_chr2_199906293_199933273	1/1	c0001	1158	305	66	57	150	9	21	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0002	1158	63	0	5	51	1	6	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0003	1158	18	7	7	0	0	4	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0004	1158	16	0	1	13	0	2	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0005	1158	3	3	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0006	1158	1	0	1	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0007	1158	1	0	0	0	0	1	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0008	1158	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0009	1158	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0010	1158	1	0	0	1	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0011	1158	1	0	1	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf69_chr2_199906293_199933273	0/0	c0012	1158	1	1	0	0	0	0	copy fasta	C2orf69	chr2	199906293	199933273
C2orf72_chr2_231032523_231054719	0/0	c0001	888	143	27	20	69	6	21	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	1/1	c0002	888	133	11	39	51	8	22	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0003	888	129	31	11	82	2	3	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0004	888	19	18	1	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0005	888	15	0	1	12	0	2	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0006	888	12	12	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0007	888	2	0	0	2	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0008	888	2	0	0	2	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0009	888	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0010	888	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0011	888	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0012	888	1	1	0	0	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf72_chr2_231032523_231054719	0/0	c0013	888	1	0	0	1	0	0	copy fasta	C2orf72	chr2	231032523	231054719
C2orf73_chr2_54325884_54366581	0/0	c0001	864	146	19	22	94	2	9	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	1/0	c0002	864	73	11	6	44	4	7	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/1	c0003	864	72	23	12	25	4	7	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0004	864	53	14	19	2	6	12	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0005	864	41	13	11	11	2	4	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0006	864	8	0	0	8	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0007	864	6	0	0	6	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0008	864	4	4	0	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0009	864	2	1	1	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0010	864	2	0	0	0	0	2	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0011	864	2	2	0	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0012	864	1	0	0	0	0	1	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0013	864	1	0	0	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0014	864	1	1	0	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0015	864	1	0	1	0	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf73_chr2_54325884_54366581	0/0	c0016	864	1	0	0	1	0	0	copy fasta	C2orf73	chr2	54325884	54366581
C2orf74_chr2_61157188_61169828	1/0	c0001	564	260	47	51	121	8	32	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/1	c0002	564	153	40	33	61	6	12	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	c0003	564	5	5	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	c0004	390	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	c0005	564	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf74_chr2_61157188_61169828	0/0	c0006	564	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828