JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2orf74_chr2_61157188_61169828	0/0	c0007	564	1	1	0	0	0	0	copy fasta	C2orf74	chr2	61157188	61169828
C2orf76_chr2_119297225_119371834	0/1	c0001	381	184	30	37	84	6	26	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	1/0	c0002	381	109	7	28	59	4	10	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	c0003	381	45	41	3	0	1	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	c0004	381	9	5	2	0	1	1	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	c0005	381	4	4	0	0	0	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	c0006	381	2	0	0	1	0	1	copy fasta	C2orf76	chr2	119297225	119371834
C2orf76_chr2_119297225_119371834	0/0	c0007	381	1	1	0	0	0	0	copy fasta	C2orf76	chr2	119297225	119371834
C2orf78_chr2_73779183_73822148	1/1	c0001	2769	187	64	31	57	8	25	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0002	2672	6	5	1	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0003	2769	5	4	1	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0004	2769	2	2	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0005	2769	2	2	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0006	2769	2	2	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0007	2769	1	0	0	1	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0008	2769	1	0	1	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0009	2769	1	0	0	1	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0010	2769	1	0	0	1	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0011	2769	1	1	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0012	2769	1	1	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0013	2769	1	0	0	0	0	1	copy fasta	C2orf78	chr2	73779183	73822148
C2orf78_chr2_73779183_73822148	0/0	c0014	2769	1	1	0	0	0	0	copy fasta	C2orf78	chr2	73779183	73822148
C2orf80_chr2_208160347_208195030	0/1	c0001	582	279	75	63	89	15	36	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	c0002	582	47	13	5	18	3	8	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	c0003	582	5	0	0	5	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	c0004	582	4	4	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	c0005	582	2	0	0	2	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	c0006	582	2	2	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	1/0	c0007	582	2	1	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf80_chr2_208160347_208195030	0/0	c0008	582	1	1	0	0	0	0	copy fasta	C2orf80	chr2	208160347	208195030
C2orf81_chr2_74409177_74426619	0/1	c0001	1848	145	34	10	92	1	7	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	1/0	c0002	1848	124	16	39	35	11	22	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0003	1872	102	37	10	54	0	1	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0004	1848	11	0	6	5	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0005	1848	8	8	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0006	1848	3	0	0	0	0	3	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0007	1872	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0008	1896	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0009	1872	1	1	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0010	1848	1	1	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0011	1848	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0012	1833	1	0	0	0	0	1	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0013	1848	1	0	1	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0014	1848	1	0	0	1	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf81_chr2_74409177_74426619	0/0	c0015	1848	1	1	0	0	0	0	copy fasta	C2orf81	chr2	74409177	74426619
C2orf88_chr2_190175863_190208484	1/1	c0001	288	234	40	42	105	13	32	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	c0002	288	184	55	20	92	5	12	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	c0003	288	1	1	0	0	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf88_chr2_190175863_190208484	0/0	c0004	288	1	0	0	1	0	0	copy fasta	C2orf88	chr2	190175863	190208484
C2orf92_chr2_97664713_97708066	1/1	c0001	798	172	65	31	52	3	19	copy fasta	C2orf92	chr2	97664713	97708066