JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C2orf92_chr2_97664713_97708066	0/0	c0002	798	83	9	23	38	5	8	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0003	798	29	1	2	23	0	3	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0004	797	14	12	2	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0005	798	3	0	0	3	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0006	798	3	3	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0007	795	1	0	0	1	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0008	798	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0009	798	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0010	797	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0011	765	1	1	0	0	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C2orf92_chr2_97664713_97708066	0/0	c0012	798	1	0	0	1	0	0	copy fasta	C2orf92	chr2	97664713	97708066
C3AR1_chr12_8051844_8071359	1/1	c0001	1449	379	84	76	170	11	36	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0002	1449	28	8	1	11	0	8	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0003	1449	8	0	5	0	3	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0004	1449	2	2	0	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0005	1449	2	0	0	2	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0006	1449	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0007	1449	1	0	1	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0008	1449	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0009	1449	1	0	0	1	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3AR1_chr12_8051844_8071359	0/0	c0010	1449	1	0	1	0	0	0	copy fasta	C3AR1	chr12	8051844	8071359
C3_chr19_6672704_6725650	0/0	c0001	4992	55	8	13	33	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0002	4992	39	3	3	26	0	7	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0003	4992	34	1	5	28	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0004	4992	32	4	1	16	1	10	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/1	c0005	4992	22	5	11	1	3	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	1/0	c0006	4992	13	1	5	2	1	3	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0007	4992	12	3	0	5	0	4	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0008	4992	12	0	3	5	1	3	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0009	4992	9	0	2	2	2	3	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0010	4992	9	9	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0011	4992	9	9	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0012	4992	8	6	0	0	0	2	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0013	4992	7	7	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0014	4992	6	1	4	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0015	4992	6	0	3	0	1	2	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0016	4992	5	0	0	4	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0017	4992	4	1	2	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0018	4992	4	0	1	3	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0019	4992	4	3	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0020	4992	4	0	2	0	1	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0021	4992	3	3	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0022	4992	3	0	0	2	1	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0023	4992	3	0	0	1	1	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0024	4992	3	3	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0025	4992	3	0	1	0	1	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0026	4992	3	1	2	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0027	4992	2	0	0	2	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0028	4992	2	0	0	1	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0029	4992	2	0	0	1	0	1	copy fasta	C3	chr19	6672704	6725650