JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C3_chr19_6672704_6725650	0/0	c0030	4992	2	2	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0031	4992	2	0	2	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0032	4992	2	0	0	2	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0033	4992	2	2	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0034	4992	2	1	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0035	4992	2	1	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0036	4992	2	2	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0037	4992	2	0	2	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0038	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0039	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0040	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0041	4992	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0042	4992	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0043	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0044	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0045	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0046	4992	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0047	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0048	4992	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0049	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0050	4992	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0051	4992	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0052	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0053	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0054	4992	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0055	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0056	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0057	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0058	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0059	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0060	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0061	4992	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0062	4992	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0063	4992	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0064	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0065	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0066	4992	1	0	0	1	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0067	4992	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0068	4992	1	0	1	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0069	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0070	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0071	4992	1	0	0	0	0	1	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0072	4992	1	0	0	0	1	0	copy fasta	C3	chr19	6672704	6725650
C3_chr19_6672704_6725650	0/0	c0073	4992	1	1	0	0	0	0	copy fasta	C3	chr19	6672704	6725650
C3orf14_chr3_62314022_62341213	1/1	c0001	387	380	96	71	162	10	39	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	c0002	387	7	0	1	0	0	6	copy fasta	C3orf14	chr3	62314022	62341213
C3orf14_chr3_62314022_62341213	0/0	c0003	387	1	0	0	0	0	1	copy fasta	C3orf14	chr3	62314022	62341213
C3orf18_chr3_50553025_50572747	0/0	c0001	489	304	54	56	153	10	31	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	1/1	c0002	489	62	30	10	14	3	3	copy fasta	C3orf18	chr3	50553025	50572747
C3orf18_chr3_50553025_50572747	0/0	c0003	489	15	2	8	0	1	4	copy fasta	C3orf18	chr3	50553025	50572747