JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C3orf18_chr3_50553025_50572747	0/0	c0004	489	1	0	0	1	0	0	copy fasta	C3orf18	chr3	50553025	50572747
C3orf20_chr3_14670141_14778036	1/1	c0001	2715	160	44	29	67	3	15	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0002	2715	60	13	14	21	5	7	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0003	2715	49	11	13	18	2	5	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0004	2715	25	4	6	9	0	6	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0005	2715	25	0	0	24	1	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0006	2715	20	0	6	12	0	2	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0007	2715	4	0	0	4	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0008	2715	4	0	2	0	0	2	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0009	2715	4	4	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0010	2715	3	3	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0011	2715	3	1	0	2	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0012	2715	2	2	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0013	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0014	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0015	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0016	2715	1	0	1	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0017	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0018	2715	1	0	1	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0019	2715	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0020	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0021	2715	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0022	2715	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0023	2715	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0024	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0025	2715	1	0	0	0	0	1	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0026	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0027	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0028	2715	1	0	0	0	0	1	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0029	2715	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0030	2715	1	1	0	0	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0031	2715	1	0	0	0	1	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0032	2715	1	0	0	0	0	1	copy fasta	C3orf20	chr3	14670141	14778036
C3orf20_chr3_14670141_14778036	0/0	c0033	2715	1	0	0	1	0	0	copy fasta	C3orf20	chr3	14670141	14778036
C3orf22_chr3_126544692_126563932	1/0	c0001	426	291	66	59	120	11	34	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/1	c0002	426	78	3	14	52	5	3	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	c0003	426	38	28	5	0	0	5	copy fasta	C3orf22	chr3	126544692	126563932
C3orf22_chr3_126544692_126563932	0/0	c0004	426	1	1	0	0	0	0	copy fasta	C3orf22	chr3	126544692	126563932
C3orf33_chr3_155757617_155811278	0/0	c0001	885	160	16	31	95	4	14	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/1	c0002	885	126	18	30	52	5	20	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	1/0	c0003	885	54	16	14	14	5	4	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0004	885	26	12	1	10	0	3	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0005	885	9	9	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0006	885	7	6	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0007	885	5	5	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0008	885	4	4	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0009	885	4	4	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0010	885	2	2	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0011	885	2	2	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0012	885	1	0	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278