JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C3orf33_chr3_155757617_155811278	0/0	c0013	885	1	0	0	0	0	1	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0014	885	1	0	0	1	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0015	885	1	0	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0016	885	1	0	1	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0017	885	1	1	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf33_chr3_155757617_155811278	0/0	c0018	885	1	1	0	0	0	0	copy fasta	C3orf33	chr3	155757617	155811278
C3orf38_chr3_88144959_88162965	0/1	c0001	990	234	54	35	116	8	20	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	1/0	c0002	990	80	30	13	28	1	7	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	c0003	990	2	0	1	0	1	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	c0004	990	1	0	0	0	0	1	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	c0005	990	1	1	0	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	c0006	990	1	0	1	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf38_chr3_88144959_88162965	0/0	c0007	990	1	1	0	0	0	0	copy fasta	C3orf38	chr3	88144959	88162965
C3orf49_chr3_63814299_63853636	1/1	c0001	879	296	82	50	117	11	34	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	c0002	879	61	4	14	34	3	6	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	c0003	884	20	0	0	20	0	0	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	c0004	879	8	6	0	0	0	2	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	c0005	879	2	0	0	2	0	0	copy fasta	C3orf49	chr3	63814299	63853636
C3orf49_chr3_63814299_63853636	0/0	c0006	879	1	0	0	1	0	0	copy fasta	C3orf49	chr3	63814299	63853636
C3orf52_chr3_112081389_112123210	0/1	c0001	654	310	58	60	133	15	43	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0002	654	36	20	2	10	1	3	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	1/0	c0003	654	10	9	0	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0004	654	4	0	0	4	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0005	654	3	2	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0006	654	2	1	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0007	654	1	1	0	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0008	654	1	0	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0009	654	1	0	0	1	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0010	654	1	0	1	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0011	654	1	0	0	0	0	1	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0012	654	1	1	0	0	0	0	copy fasta	C3orf52	chr3	112081389	112123210
C3orf52_chr3_112081389_112123210	0/0	c0013	654	1	0	0	0	0	1	copy fasta	C3orf52	chr3	112081389	112123210
C3orf62_chr3_49263596_49282232	1/1	c0001	804	269	77	68	80	13	29	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	c0002	804	35	5	7	17	3	3	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	c0003	804	12	12	0	0	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	c0004	804	5	1	0	0	0	4	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	c0005	804	2	0	0	2	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	c0006	804	1	1	0	0	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	c0007	804	1	0	0	1	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf62_chr3_49263596_49282232	0/0	c0008	804	1	0	1	0	0	0	copy fasta	C3orf62	chr3	49263596	49282232
C3orf70_chr3_185071838_185158060	1/1	c0001	753	358	69	67	170	9	41	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	c0002	753	21	4	6	10	1	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	c0003	753	3	3	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	c0004	753	3	2	1	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	c0005	753	2	2	0	0	0	0	copy fasta	C3orf70	chr3	185071838	185158060
C3orf70_chr3_185071838_185158060	0/0	c0006	753	1	0	0	0	0	1	copy fasta	C3orf70	chr3	185071838	185158060
C3orf80_chr3_160220422_160233213	1/1	c0001	744	403	96	75	172	15	43	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	c0002	744	3	0	1	0	1	1	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	c0003	744	2	2	0	0	0	0	copy fasta	C3orf80	chr3	160220422	160233213
C3orf80_chr3_160220422_160233213	0/0	c0004	744	2	2	0	0	0	0	copy fasta	C3orf80	chr3	160220422	160233213