JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C3orf84_chr3_49172634_49196858	1/1	c0001	615	267	80	57	75	11	42	copy fasta	C3orf84	chr3	49172634	49196858
C3orf84_chr3_49172634_49196858	0/0	c0002	615	37	6	7	18	3	3	copy fasta	C3orf84	chr3	49172634	49196858
C3orf84_chr3_49172634_49196858	0/0	c0003	615	1	0	0	1	0	0	copy fasta	C3orf84	chr3	49172634	49196858
C3orf84_chr3_49172634_49196858	0/0	c0004	501	1	0	0	0	0	1	copy fasta	C3orf84	chr3	49172634	49196858
C3orf85_chr3_109131719_109156401	1/1	c0001	273	185	83	41	25	9	25	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	c0002	273	182	17	39	106	5	15	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	c0003	273	2	0	2	0	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C3orf85_chr3_109131719_109156401	0/0	c0004	273	1	0	0	1	0	0	copy fasta	C3orf85	chr3	109131719	109156401
C4A_chr6_31977057_32007681	0/0	c0001	5235	44	2	14	26	0	2	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0002	5235	40	16	5	13	0	6	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0003	5235	31	14	8	3	0	6	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0004	5235	28	0	9	17	1	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0005	5235	27	2	1	21	0	3	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0006	5235	21	1	2	16	0	2	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0007	5235	16	0	2	12	2	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0008	5235	15	5	5	2	2	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0009	5235	15	4	3	6	1	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0010	5235	13	1	1	11	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0011	5235	6	0	0	1	1	4	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0012	5235	5	5	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0013	5235	4	1	2	0	0	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0014	5235	4	4	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0015	5235	4	3	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0016	5235	4	4	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0017	5235	3	0	0	3	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0018	5235	3	0	0	1	1	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0019	5235	3	2	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0020	5235	2	0	0	2	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0021	5235	2	1	1	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0022	5235	2	0	0	2	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0023	5235	2	0	0	0	0	2	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0024	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0025	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0026	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0027	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0028	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0029	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0030	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0031	5235	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0032	5235	1	0	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0033	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0034	5235	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0035	5235	1	0	1	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0036	5235	1	0	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0037	5235	1	0	0	0	0	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0038	5235	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0039	5235	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0040	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0041	5235	1	0	0	0	1	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0042	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681