JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C4A_chr6_31977057_32007681	0/0	c0043	5235	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0044	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0045	5235	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0046	5235	1	1	0	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0047	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0048	5235	1	0	1	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0049	5235	1	0	0	0	0	1	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0050	5235	1	0	1	0	0	0	copy fasta	C4A	chr6	31977057	32007681
C4A_chr6_31977057_32007681	0/0	c0051	5235	1	0	0	1	0	0	copy fasta	C4A	chr6	31977057	32007681
C4BPA_chr1_207099233_207149972	0/1	c0001	1794	142	49	30	41	5	16	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0002	1794	97	5	25	42	10	15	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	1/0	c0003	1794	42	3	9	20	1	8	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0004	1794	16	16	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0005	1794	7	0	5	2	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0006	1794	7	1	2	3	0	1	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0007	1794	5	0	3	0	0	2	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0008	1794	5	4	1	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0009	1794	5	5	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0010	1794	2	1	1	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0011	1794	2	2	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0012	1794	2	2	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0013	1794	1	0	0	1	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0014	1794	1	0	0	1	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0015	1794	1	0	0	1	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0016	1794	1	0	0	1	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0017	1794	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0018	1794	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0019	1794	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0020	1794	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0021	1794	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPA_chr1_207099233_207149972	0/0	c0022	1794	1	1	0	0	0	0	copy fasta	C4BPA	chr1	207099233	207149972
C4BPB_chr1_207083860_207104993	1/1	c0001	759	224	10	51	111	17	33	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	c0002	759	152	79	28	35	1	9	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	c0003	759	8	8	0	0	0	0	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	c0004	759	2	0	0	0	0	2	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	c0005	759	1	1	0	0	0	0	copy fasta	C4BPB	chr1	207083860	207104993
C4BPB_chr1_207083860_207104993	0/0	c0006	759	1	0	1	0	0	0	copy fasta	C4BPB	chr1	207083860	207104993
C4B_chr6_32009795_32040418	0/0	c0001	5235	64	6	16	37	2	3	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0002	5235	49	1	17	25	1	5	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0003	5235	32	16	11	2	2	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0004	5235	22	7	4	9	1	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0005	5235	15	10	1	0	0	4	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0006	5235	13	0	0	13	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0007	5235	13	2	2	5	2	2	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0008	5235	10	1	1	6	0	2	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0009	5235	10	8	2	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0010	5235	9	0	0	9	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0011	5235	8	0	0	6	2	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0012	5235	8	2	0	2	1	3	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0013	5235	6	0	0	4	0	2	copy fasta	C4B	chr6	32009795	32040418