JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C4B_chr6_32009795_32040418	0/0	c0014	5235	6	0	0	1	1	4	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0015	5235	5	5	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0016	5235	5	1	1	3	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0017	5235	4	1	0	3	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0018	5235	3	0	1	2	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0019	5235	3	0	3	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0020	5235	3	1	0	2	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0021	5235	3	3	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0022	5235	3	1	0	2	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0023	5235	2	0	0	2	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0024	5235	2	0	0	2	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0025	5235	2	0	0	1	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0026	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0027	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0028	5235	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0029	5235	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0030	5235	1	0	0	0	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0031	5235	1	0	0	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0032	5235	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0033	5235	1	0	0	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0034	5235	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0035	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0036	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0037	5235	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0038	5235	1	0	0	0	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0039	5235	1	0	0	0	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0040	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0041	5235	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0042	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0043	5235	1	0	0	0	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0044	5235	1	0	0	0	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0045	5235	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0046	5235	1	0	0	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0047	5235	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0048	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0049	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0050	5235	1	0	0	0	1	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0051	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0052	5235	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0053	5235	1	0	1	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0054	5235	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0055	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0056	5235	1	0	0	0	0	1	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0057	5235	1	1	0	0	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0058	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4B_chr6_32009795_32040418	0/0	c0059	5235	1	0	0	1	0	0	copy fasta	C4B	chr6	32009795	32040418
C4orf17_chr4_99506021_99547303	1/0	c0001	1080	176	9	46	106	5	9	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0002	1080	72	19	12	25	1	15	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0003	1080	43	9	1	32	0	1	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0004	1080	36	21	7	1	0	7	copy fasta	C4orf17	chr4	99506021	99547303