JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C4orf17_chr4_99506021_99547303	0/0	c0005	1080	29	11	5	8	0	5	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0006	1068	18	17	1	0	0	0	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0007	1080	4	4	0	0	0	0	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0008	1080	3	3	0	0	0	0	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0009	1080	3	3	0	0	0	0	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/0	c0010	1080	1	0	0	0	0	1	copy fasta	C4orf17	chr4	99506021	99547303
C4orf17_chr4_99506021_99547303	0/1	c0011	1080	1	0	0	0	0	0	copy fasta	C4orf17	chr4	99506021	99547303
C4orf19_chr4_37448925_37598510	1/0	c0001	945	297	82	68	107	9	30	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/1	c0002	945	44	3	13	16	5	6	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	c0003	945	5	0	0	5	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	c0004	945	3	3	0	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	c0005	945	1	0	0	0	0	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	c0006	945	1	0	0	0	0	1	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	c0007	945	1	1	0	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	c0008	945	1	0	1	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf19_chr4_37448925_37598510	0/0	c0009	945	1	1	0	0	0	0	copy fasta	C4orf19	chr4	37448925	37598510
C4orf33_chr4_129091152_129121637	0/0	c0001	600	226	24	53	123	4	22	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	1/0	c0002	600	95	32	14	42	2	4	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/1	c0003	600	29	3	3	11	7	4	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0004	600	24	9	1	10	1	3	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0005	600	9	9	0	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0006	600	3	0	0	0	1	2	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0007	600	3	1	2	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0008	600	2	0	0	2	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0009	600	2	0	1	0	1	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0010	600	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0011	600	1	0	0	0	0	1	copy fasta	C4orf33	chr4	129091152	129121637
C4orf33_chr4_129091152_129121637	0/0	c0012	600	1	0	1	0	0	0	copy fasta	C4orf33	chr4	129091152	129121637
C4orf36_chr4_86871205_86897422	0/1	c0001	354	257	53	43	127	10	23	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	c0002	354	54	0	13	31	3	7	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	1/0	c0003	354	47	29	1	13	0	3	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	c0004	354	15	14	1	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	c0005	354	9	1	6	0	1	1	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	c0006	354	3	3	0	0	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf36_chr4_86871205_86897422	0/0	c0007	354	1	0	0	1	0	0	copy fasta	C4orf36	chr4	86871205	86897422
C4orf3_chr4_119291419_119305645	0/1	c0001	1761	120	4	18	72	10	15	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	1/0	c0002	1757	102	21	12	52	5	11	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0003	1761	78	3	20	45	1	9	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0004	1761	26	12	8	3	2	1	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0005	1761	25	23	2	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0006	1761	21	0	11	10	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0007	1761	13	0	0	13	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0008	1761	9	9	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0009	1761	4	4	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0010	1761	4	0	0	1	0	3	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0011	1761	3	3	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0012	1761	3	3	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0013	1761	3	2	1	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0014	1761	3	3	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0015	1761	2	0	0	2	0	0	copy fasta	C4orf3	chr4	119291419	119305645