JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C4orf3_chr4_119291419_119305645	0/0	c0016	1761	1	1	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0017	1761	1	0	0	1	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0018	1761	1	0	0	1	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0019	1757	1	0	0	0	0	1	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0020	1757	1	1	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0021	1761	1	1	0	0	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0022	1761	1	0	0	1	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf3_chr4_119291419_119305645	0/0	c0023	1757	1	0	0	1	0	0	copy fasta	C4orf3	chr4	119291419	119305645
C4orf45_chr4_158888134_159040229	0/0	c0001	561	162	74	38	30	5	15	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	c0002	561	38	9	15	2	4	8	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/1	c0003	561	27	0	4	11	4	7	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	c0004	561	19	1	1	17	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	c0005	561	5	0	0	0	0	5	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	1/0	c0006	561	4	3	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	c0007	561	4	4	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	c0008	561	3	3	0	0	0	0	copy fasta	C4orf45	chr4	158888134	159040229
C4orf45_chr4_158888134_159040229	0/0	c0009	561	2	0	0	0	1	1	copy fasta	C4orf45	chr4	158888134	159040229
C4orf46_chr4_158661675_158676887	1/1	c0001	342	356	93	68	135	14	44	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	c0002	342	9	0	0	9	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf46_chr4_158661675_158676887	0/0	c0003	342	5	5	0	0	0	0	copy fasta	C4orf46	chr4	158661675	158676887
C4orf47_chr4_185421254_185454826	1/0	c0001	930	313	73	55	136	14	34	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/1	c0002	930	25	5	10	1	0	8	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0003	930	8	8	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0004	930	5	4	1	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0005	930	1	1	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0006	930	1	0	0	1	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0007	930	1	1	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0008	930	1	0	0	1	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0009	930	1	0	0	1	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0010	930	1	1	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf47_chr4_185421254_185454826	0/0	c0011	930	1	1	0	0	0	0	copy fasta	C4orf47	chr4	185421254	185454826
C4orf48_chr4_2036995_2048964	0/1	c0001	288	383	88	74	172	12	36	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	1/0	c0002	288	3	2	0	0	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	c0003	291	3	1	2	0	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	c0004	288	1	1	0	0	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	c0005	288	1	0	0	1	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf48_chr4_2036995_2048964	0/0	c0006	288	1	0	0	1	0	0	copy fasta	C4orf48	chr4	2036995	2048964
C4orf50_chr4_5954375_6023431	0/0	c0001	4527	65	4	8	46	0	7	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0002	4527	31	0	5	24	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0003	4527	21	1	3	10	3	4	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0004	4527	18	0	8	6	2	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0005	4527	10	4	0	4	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0006	4527	7	0	4	1	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0007	4527	7	0	2	4	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0008	4527	7	0	0	7	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0009	4527	6	6	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0010	4527	6	4	0	0	0	2	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	1/0	c0011	4527	6	0	4	0	1	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0012	4527	5	0	0	0	0	5	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/1	c0013	4527	5	1	0	1	0	2	copy fasta	C4orf50	chr4	5954375	6023431