JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C4orf50_chr4_5954375_6023431	0/0	c0114	4527	1	0	0	0	0	1	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0115	4527	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0116	4527	1	0	1	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0117	4527	1	1	0	0	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf50_chr4_5954375_6023431	0/0	c0118	4527	1	0	0	1	0	0	copy fasta	C4orf50	chr4	5954375	6023431
C4orf54_chr4_99631529_99662828	1/1	c0001	5382	118	19	26	55	4	12	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0002	5382	83	19	10	51	0	3	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0003	5382	74	2	2	66	0	4	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0004	5382	23	2	10	0	1	10	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0005	5382	22	17	2	0	0	3	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0006	5382	8	7	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0007	5382	6	0	0	6	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0008	5382	6	5	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0009	5382	4	4	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0010	5382	3	0	3	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0011	5382	3	2	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0012	5382	3	0	0	3	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0013	5382	3	0	3	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0014	5382	2	2	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0015	5382	2	1	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0016	5382	2	2	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0017	5382	2	0	2	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0018	5382	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0019	5382	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0020	5382	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0021	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0022	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0023	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0024	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0025	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0026	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0027	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0028	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0029	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0030	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0031	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0032	5382	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0033	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0034	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0035	5382	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0036	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0037	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0038	5382	1	0	0	0	0	1	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0039	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0040	5382	1	0	0	1	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0041	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0042	5382	1	0	0	0	1	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0043	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0044	5382	1	1	0	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828
C4orf54_chr4_99631529_99662828	0/0	c0045	5382	1	0	1	0	0	0	copy fasta	C4orf54	chr4	99631529	99662828