JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C5AR1_chr19_47304861_47327066	0/1	c0001	1053	361	86	74	151	11	38	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0002	1053	3	2	1	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0003	1053	2	2	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	1/0	c0004	1053	2	0	0	0	0	1	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0005	1053	1	0	0	0	0	1	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0006	1053	1	0	0	1	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0007	1053	1	0	1	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0008	1053	1	0	0	0	0	1	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0009	1053	1	0	0	0	1	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0010	1053	1	0	0	0	0	1	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0011	1053	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR1_chr19_47304861_47327066	0/0	c0012	1053	1	1	0	0	0	0	copy fasta	C5AR1	chr19	47304861	47327066
C5AR2_chr19_47327175_47352329	1/1	c0001	1014	391	82	75	174	14	44	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0002	1014	3	2	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0003	1014	3	3	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0004	1014	2	2	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0005	1014	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0006	1014	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0007	1014	1	0	0	0	0	1	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0008	1014	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0009	1014	1	0	1	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0010	1014	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5AR2_chr19_47327175_47352329	0/0	c0011	1014	1	1	0	0	0	0	copy fasta	C5AR2	chr19	47327175	47352329
C5_chr9_120947335_121055275	1/0	c0001	5031	83	26	19	27	4	6	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0002	5031	69	3	19	35	4	8	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/1	c0003	5031	36	4	1	30	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0004	5031	20	16	4	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0005	5031	10	9	1	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0006	5031	8	1	0	3	2	2	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0007	5031	7	0	0	7	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0008	5031	6	6	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0009	5031	4	4	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0010	5031	4	0	4	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0011	5031	3	3	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0012	5031	3	3	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0013	5031	3	0	0	3	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0014	5031	3	3	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0015	5031	2	2	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0016	5031	2	2	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0017	5031	2	0	0	2	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0018	5031	2	0	0	2	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0019	5031	1	1	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0020	5031	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0021	5031	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0022	5031	1	1	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0023	5031	1	1	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0024	5031	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0025	5031	1	1	0	0	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0026	5031	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275
C5_chr9_120947335_121055275	0/0	c0027	5031	1	0	0	1	0	0	copy fasta	C5	chr9	120947335	121055275