JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C5orf15_chr5_133950510_133973625	1/1	c0001	798	425	88	78	202	16	39	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	c0002	798	7	5	2	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	c0003	798	1	0	0	0	0	1	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	c0004	798	1	0	0	0	0	1	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	c0005	798	1	0	0	0	0	1	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	c0006	798	1	1	0	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	c0007	798	1	1	0	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf15_chr5_133950510_133973625	0/0	c0008	798	1	1	0	0	0	0	copy fasta	C5orf15	chr5	133950510	133973625
C5orf22_chr5_31527301_31560053	1/1	c0001	1329	314	65	47	162	12	26	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0002	1329	59	7	13	26	2	11	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0003	1329	20	14	4	0	0	2	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0004	1329	5	5	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0005	1329	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0006	1329	1	0	0	1	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0007	1329	1	0	0	1	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0008	1329	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0009	1329	1	1	0	0	0	0	copy fasta	C5orf22	chr5	31527301	31560053
C5orf22_chr5_31527301_31560053	0/0	c0010	1329	1	0	0	0	0	1	copy fasta	C5orf22	chr5	31527301	31560053
C5orf24_chr5_134840968_134864735	1/1	c0001	567	392	86	61	183	14	46	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	c0002	567	4	3	1	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	c0003	567	2	2	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	c0004	567	1	1	0	0	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	c0005	549	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	c0006	567	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf24_chr5_134840968_134864735	0/0	c0007	567	1	0	0	1	0	0	copy fasta	C5orf24	chr5	134840968	134864735
C5orf34_chr5_43481709_43520148	1/1	c0001	1917	169	27	33	76	8	23	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	c0002	1917	126	43	28	30	6	19	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	c0003	1917	15	0	2	13	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	c0004	1917	14	0	0	14	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	c0005	1917	8	7	1	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	c0006	1917	4	4	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	c0007	1917	3	3	0	0	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf34_chr5_43481709_43520148	0/0	c0008	1917	1	0	0	1	0	0	copy fasta	C5orf34	chr5	43481709	43520148
C5orf46_chr5_147887722_147911538	0/0	c0001	264	196	20	36	105	8	27	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	1/1	c0002	264	108	17	28	47	6	8	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	c0003	264	97	56	4	32	0	5	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	c0004	264	44	4	7	25	2	6	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	c0005	264	6	3	3	0	0	0	copy fasta	C5orf46	chr5	147887722	147911538
C5orf46_chr5_147887722_147911538	0/0	c0006	264	1	0	0	1	0	0	copy fasta	C5orf46	chr5	147887722	147911538
C5orf47_chr5_173984170_174011140	1/1	c0001	531	360	90	62	155	16	35	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	c0002	531	10	1	5	0	1	3	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	c0003	531	5	1	2	0	0	2	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	c0004	531	4	1	1	1	0	1	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	c0005	531	2	1	0	0	1	0	copy fasta	C5orf47	chr5	173984170	174011140
C5orf47_chr5_173984170_174011140	0/0	c0006	531	1	0	0	0	0	1	copy fasta	C5orf47	chr5	173984170	174011140
C5orf52_chr5_157666533_157685158	1/1	c0001	480	193	12	37	104	13	25	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0002	480	80	31	11	32	0	6	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0003	480	77	25	18	25	2	7	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0004	480	57	21	11	21	3	1	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0005	480	4	4	0	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158