JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C5orf52_chr5_157666533_157685158	0/0	c0006	480	2	2	0	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0007	480	1	0	0	1	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0008	480	1	0	0	1	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0009	480	1	0	0	0	0	1	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0010	480	1	1	0	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf52_chr5_157666533_157685158	0/0	c0011	480	1	0	1	0	0	0	copy fasta	C5orf52	chr5	157666533	157685158
C5orf58_chr5_170227985_170251231	1/1	c0001	246	222	52	43	94	8	23	copy fasta	C5orf58	chr5	170227985	170251231
C5orf58_chr5_170227985_170251231	0/0	c0002	246	203	41	43	90	10	19	copy fasta	C5orf58	chr5	170227985	170251231
C5orf58_chr5_170227985_170251231	0/0	c0003	246	1	1	0	0	0	0	copy fasta	C5orf58	chr5	170227985	170251231
C5orf63_chr5_127046304_127078502	1/1	c0001	348	347	84	56	156	8	41	copy fasta	C5orf63	chr5	127046304	127078502
C5orf63_chr5_127046304_127078502	0/0	c0002	348	2	1	0	0	0	1	copy fasta	C5orf63	chr5	127046304	127078502
C5orf63_chr5_127046304_127078502	0/0	c0003	348	1	1	0	0	0	0	copy fasta	C5orf63	chr5	127046304	127078502
C6_chr5_41137116_41218532	0/0	c0001	2805	170	31	31	80	5	23	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/1	c0002	2805	170	34	25	89	10	11	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0003	2805	11	7	2	0	1	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0004	2805	8	0	0	8	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0005	2805	3	3	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0006	2805	3	0	2	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0007	2805	3	3	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0008	2805	3	2	1	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0009	2805	2	2	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0010	2805	2	2	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0011	2805	2	0	2	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0012	2805	2	2	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0013	2805	2	0	0	2	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0014	2805	2	2	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	1/0	c0015	2805	2	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0016	2805	2	0	0	2	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0017	2805	2	0	2	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0018	2805	1	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0019	2805	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0020	2805	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0021	2805	1	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0022	2805	1	0	0	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0023	2805	1	0	0	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0024	2805	1	0	1	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0025	2805	1	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0026	2805	1	0	0	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0027	2805	1	0	0	0	0	1	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0028	2805	1	0	0	1	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0029	2805	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6_chr5_41137116_41218532	0/0	c0030	2805	1	1	0	0	0	0	copy fasta	C6	chr5	41137116	41218532
C6orf118_chr6_165274664_165314605	1/1	c0001	1410	161	8	30	100	2	19	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0002	1410	111	21	24	49	2	15	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0003	1410	20	18	2	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0004	1410	17	12	1	1	1	2	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0005	1410	9	0	3	0	3	3	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0006	1410	7	4	2	0	0	1	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0007	1410	7	7	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0008	1410	5	4	1	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605