JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C6orf118_chr6_165274664_165314605	0/0	c0009	1410	5	5	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0010	1410	3	3	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0011	1410	2	2	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0012	1410	2	2	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0013	1410	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0014	1410	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0015	1410	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0016	1410	1	0	0	1	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0017	1410	1	0	1	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0018	1410	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0019	1410	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0020	1410	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0021	1410	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0022	1494	1	1	0	0	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf118_chr6_165274664_165314605	0/0	c0023	1410	1	0	0	1	0	0	copy fasta	C6orf118	chr6	165274664	165314605
C6orf120_chr6_169697126_169711360	1/1	c0001	576	404	93	65	202	8	34	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	c0002	576	3	0	0	3	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	c0003	576	2	2	0	0	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	c0004	576	2	0	2	0	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	c0005	576	2	0	0	0	0	2	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	c0006	576	1	0	0	1	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	c0007	576	1	1	0	0	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf120_chr6_169697126_169711360	0/0	c0008	576	1	0	1	0	0	0	copy fasta	C6orf120	chr6	169697126	169711360
C6orf132_chr6_42096119_42147620	1/0	c0001	3567	123	6	28	62	7	19	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0002	3567	70	13	7	43	1	6	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0003	3567	23	19	1	0	1	2	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/1	c0004	3567	20	0	5	9	1	4	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0005	3567	18	5	6	5	1	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0006	3567	12	1	7	0	2	2	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0007	3567	10	7	2	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0008	3534	7	0	4	0	3	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0009	3567	6	3	2	0	1	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0010	3567	5	0	5	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0011	3567	5	5	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0012	3567	4	4	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0013	3567	3	3	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0014	3567	3	2	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0015	3567	3	2	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0016	3567	3	2	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0017	3567	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0018	3567	2	1	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0019	3534	2	0	2	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0020	3567	2	0	2	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0021	3567	2	0	0	0	0	2	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0022	3567	2	2	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0023	3567	2	0	0	1	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0024	3561	2	0	0	0	0	2	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0025	3567	2	0	1	0	1	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0026	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0027	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620