JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C6orf132_chr6_42096119_42147620	0/0	c0028	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0029	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0030	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0031	3567	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0032	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0033	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0034	3567	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0035	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0036	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0037	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0038	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0039	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0040	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0041	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0042	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0043	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0044	3567	1	0	1	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0045	3561	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0046	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0047	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0048	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0049	3567	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0050	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0051	3567	1	0	0	0	0	1	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0052	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0053	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0054	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0055	3567	1	1	0	0	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf132_chr6_42096119_42147620	0/0	c0056	3567	1	0	0	1	0	0	copy fasta	C6orf132	chr6	42096119	42147620
C6orf136_chr6_30642133_30658207	0/1	c0001	1491	343	72	56	160	13	41	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0002	1491	20	11	7	1	1	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0003	1491	17	10	5	0	2	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0004	1491	15	0	0	15	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0005	1491	8	0	0	7	0	1	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0006	1491	3	0	3	0	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0007	1491	1	1	0	0	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0008	1491	1	0	1	0	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf136_chr6_30642133_30658207	0/0	c0009	1491	1	0	0	1	0	0	copy fasta	C6orf136	chr6	30642133	30658207
C6orf141_chr6_49545668_49557095	0/1	c0001	735	373	57	63	191	16	45	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	c0002	735	20	16	1	0	2	1	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	c0003	735	8	8	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	1/0	c0004	735	8	7	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	c0005	735	2	1	1	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	c0006	735	1	0	1	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	c0007	735	1	0	0	1	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf141_chr6_49545668_49557095	0/0	c0008	735	1	1	0	0	0	0	copy fasta	C6orf141	chr6	49545668	49557095
C6orf15_chr6_31106223_31117575	0/1	c0001	978	207	37	31	104	11	23	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0002	978	58	0	9	45	1	3	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0003	978	31	2	3	23	1	2	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0004	978	26	0	0	21	0	5	copy fasta	C6orf15	chr6	31106223	31117575