JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C6orf15_chr6_31106223_31117575	0/0	c0005	978	26	15	6	0	1	4	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0006	978	20	6	7	6	0	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0007	978	18	4	4	4	1	5	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0008	945	13	10	2	0	0	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0009	978	8	8	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0010	978	7	1	4	0	2	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0011	978	7	0	5	0	1	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0012	978	5	1	3	0	0	1	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0013	978	2	2	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0014	978	2	0	0	0	0	2	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0015	978	2	2	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0016	978	2	2	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0017	912	1	1	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0018	978	1	1	0	0	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf15_chr6_31106223_31117575	0/0	c0019	978	1	0	0	1	0	0	copy fasta	C6orf15	chr6	31106223	31117575
C6orf163_chr6_87339813_87370463	1/1	c0001	990	406	65	71	206	16	46	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0002	990	13	13	0	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0003	990	8	8	0	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0004	990	4	2	2	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0005	990	1	0	0	1	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0006	990	1	0	1	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0007	990	1	1	0	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0008	990	1	0	0	1	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf163_chr6_87339813_87370463	0/0	c0009	990	1	1	0	0	0	0	copy fasta	C6orf163	chr6	87339813	87370463
C6orf226_chr6_42885265_42895821	1/1	c0001	306	383	88	75	159	18	41	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	c0002	306	6	2	3	0	0	1	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	c0003	306	2	2	0	0	0	0	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	c0004	306	2	0	2	0	0	0	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	c0005	306	2	2	0	0	0	0	copy fasta	C6orf226	chr6	42885265	42895821
C6orf226_chr6_42885265_42895821	0/0	c0006	306	1	0	0	1	0	0	copy fasta	C6orf226	chr6	42885265	42895821
C6orf47_chr6_31653298_31665778	0/1	c0001	885	290	52	42	144	14	37	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	c0002	885	71	7	18	42	1	3	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	c0003	885	61	29	16	5	3	8	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	c0004	885	3	0	0	3	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	c0005	885	2	2	0	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	c0006	885	1	1	0	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf47_chr6_31653298_31665778	0/0	c0007	885	1	1	0	0	0	0	copy fasta	C6orf47	chr6	31653298	31665778
C6orf52_chr6_10666422_10699616	1/1	c0001	459	196	21	55	87	6	25	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	c0002	459	59	54	4	0	0	1	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	c0003	459	25	16	1	5	0	3	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	c0004	459	3	3	0	0	0	0	copy fasta	C6orf52	chr6	10666422	10699616
C6orf52_chr6_10666422_10699616	0/0	c0005	459	1	0	0	0	0	1	copy fasta	C6orf52	chr6	10666422	10699616
C6orf58_chr6_127572174_127596820	1/0	c0001	993	436	76	77	216	18	48	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	c0002	993	7	7	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	c0003	993	4	4	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	c0004	993	2	0	2	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	c0005	993	1	1	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	c0006	993	1	0	1	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/0	c0007	993	1	1	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf58_chr6_127572174_127596820	0/1	c0008	993	1	0	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820