JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C6orf58_chr6_127572174_127596820	0/0	c0009	993	1	1	0	0	0	0	copy fasta	C6orf58	chr6	127572174	127596820
C6orf62_chr6_24699861_24724154	1/1	c0001	690	413	90	78	181	18	44	copy fasta	C6orf62	chr6	24699861	24724154
C6orf62_chr6_24699861_24724154	0/0	c0002	690	1	0	0	1	0	0	copy fasta	C6orf62	chr6	24699861	24724154
C6orf89_chr6_36880952_36933964	1/1	c0001	1044	242	48	50	108	7	27	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	c0002	1044	110	26	14	62	3	5	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	c0003	1044	20	4	6	3	2	5	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	c0004	1044	14	14	0	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	c0005	1044	7	0	1	6	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	c0006	1044	1	0	1	0	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	c0007	1044	1	0	0	0	0	1	copy fasta	C6orf89	chr6	36880952	36933964
C6orf89_chr6_36880952_36933964	0/0	c0008	1044	1	0	0	1	0	0	copy fasta	C6orf89	chr6	36880952	36933964
C7_chr5_40904497_40989643	1/0	c0001	2532	135	58	23	45	3	5	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0002	2532	116	17	20	66	2	11	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/1	c0003	2532	40	1	2	27	2	7	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0004	2532	22	0	1	21	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0005	2532	18	3	7	5	1	2	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0006	2532	8	1	3	0	2	2	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0007	2532	8	1	5	0	2	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0008	2532	7	0	2	5	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0009	2532	3	0	0	2	0	1	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0010	2532	3	0	0	3	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0011	2532	2	0	1	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0012	2532	2	0	0	2	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0013	2532	1	0	0	0	0	1	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0014	2532	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0015	2532	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0016	2532	1	0	0	0	0	1	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0017	2532	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0018	2532	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0019	2532	1	0	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0020	2532	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0021	2532	1	0	1	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0022	2532	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0023	2532	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0024	2532	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0025	2532	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0026	2532	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0027	2532	1	1	0	0	0	0	copy fasta	C7	chr5	40904497	40989643
C7_chr5_40904497_40989643	0/0	c0028	2532	1	0	0	1	0	0	copy fasta	C7	chr5	40904497	40989643
C7orf25_chr7_42904273_42917070	1/1	c0001	1266	379	89	70	162	14	42	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	c0002	1266	3	3	0	0	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	c0003	1266	1	0	0	1	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf25_chr7_42904273_42917070	0/0	c0004	1266	1	0	0	1	0	0	copy fasta	C7orf25	chr7	42904273	42917070
C7orf31_chr7_25129692_25185354	0/1	c0001	1773	86	6	19	50	4	6	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0002	1773	81	5	14	40	4	18	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	1/0	c0003	1773	66	2	11	42	2	8	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0004	1773	41	3	0	35	2	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0005	1773	21	17	4	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0006	1773	20	2	4	12	1	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0007	1773	16	16	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354