Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACAT1_chr11_108116567_108152603	0/0	c0002	1284	133	7	23	75	7	21	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	c0003	1284	50	26	7	9	0	8	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	c0004	1284	4	4	0	0	0	0	copy fasta	ACAT1	chr11	108116567	108152603
ACAT1_chr11_108116567_108152603	0/0	c0005	1284	1	1	0	0	0	0	copy fasta	ACAT1	chr11	108116567	108152603
ACAT2_chr6_159757045_159784112	1/0	c0001	1194	134	41	13	65	3	11	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	c0002	1194	121	14	18	72	3	14	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/1	c0003	1194	88	23	25	23	5	11	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	c0004	1194	51	4	22	12	3	10	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	c0005	1194	8	8	0	0	0	0	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	c0006	1194	1	0	0	1	0	0	copy fasta	ACAT2	chr6	159757045	159784112
ACAT2_chr6_159757045_159784112	0/0	c0007	1194	1	0	0	1	0	0	copy fasta	ACAT2	chr6	159757045	159784112
ACBD3_chr1_226139679_226191741	1/0	c0001	1587	200	41	19	102	5	32	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/1	c0002	1587	182	32	52	76	6	15	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0003	1587	3	0	0	3	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0004	1587	2	0	0	2	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0005	1587	2	2	0	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0006	1587	2	0	1	0	1	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0007	1587	1	0	1	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0008	1587	1	0	0	0	0	1	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0009	1587	1	0	0	1	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0010	1587	1	0	1	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD3_chr1_226139679_226191741	0/0	c0011	1587	1	1	0	0	0	0	copy fasta	ACBD3	chr1	226139679	226191741
ACBD4_chr17_45130687_45149176	1/1	c0001	918	413	68	78	200	16	49	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	c0002	918	26	20	2	3	0	1	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	c0003	918	5	0	0	5	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	c0004	918	3	3	0	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	c0005	918	2	2	0	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	c0006	918	1	1	0	0	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	c0007	918	1	0	0	1	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD4_chr17_45130687_45149176	0/0	c0008	918	1	0	0	1	0	0	copy fasta	ACBD4	chr17	45130687	45149176
ACBD5_chr10_27190214_27245797	1/1	c0001	1578	158	53	22	60	5	16	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0002	1578	92	4	26	49	3	10	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0003	1578	41	0	0	36	0	5	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0004	1578	34	13	13	7	1	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0005	1578	26	21	3	0	0	2	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0006	1578	24	0	0	23	0	1	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0007	1578	2	0	0	2	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0008	1578	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0009	1578	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0010	1578	1	1	0	0	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0011	1578	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0012	1578	1	0	0	0	1	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0013	1578	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD5_chr10_27190214_27245797	0/0	c0014	1578	1	0	0	1	0	0	copy fasta	ACBD5	chr10	27190214	27245797
ACBD6_chr1_180283230_180507577	1/1	c0001	849	331	86	62	152	8	21	copy fasta	ACBD6	chr1	180283230	180507577
ACBD6_chr1_180283230_180507577	0/0	c0002	849	3	0	0	0	0	3	copy fasta	ACBD6	chr1	180283230	180507577
ACBD7_chr10_15070475_15093776	1/1	c0001	267	424	94	83	188	17	40	copy fasta	ACBD7	chr10	15070475	15093776
ACBD7_chr10_15070475_15093776	0/0	c0002	267	2	0	1	0	1	0	copy fasta	ACBD7	chr10	15070475	15093776
ACCSL_chr11_44042981_44064977	0/1	c0001	1707	303	73	40	145	15	29	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	1/0	c0002	1707	101	12	32	43	1	12	copy fasta	ACCSL	chr11	44042981	44064977