JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C7orf31_chr7_25129692_25185354	0/0	c0008	1773	11	8	3	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0009	1773	10	7	2	0	0	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0010	1773	10	9	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0011	1773	6	0	3	0	1	2	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0012	1773	6	6	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0013	1773	4	0	1	0	2	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0014	1773	4	0	4	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0015	1773	4	0	1	0	0	3	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0016	1773	3	3	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0017	1773	3	3	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0018	1773	3	3	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0019	1773	2	0	0	0	0	2	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0020	1773	2	0	0	0	0	2	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0021	1773	2	2	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0022	1773	2	0	0	2	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0023	1773	2	0	2	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0024	1773	1	0	0	0	0	1	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0025	1773	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0026	1773	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0027	1773	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0028	1773	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0029	1773	1	0	1	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0030	1773	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0031	1773	1	1	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0032	1773	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0033	1773	1	1	0	0	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf31_chr7_25129692_25185354	0/0	c0034	1773	1	0	0	1	0	0	copy fasta	C7orf31	chr7	25129692	25185354
C7orf33_chr7_148585766_148620860	1/1	c0001	534	413	77	74	198	17	45	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0002	534	11	11	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0003	534	7	0	5	0	1	1	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0004	534	5	4	1	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0005	534	4	4	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0006	534	1	0	0	1	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0007	534	1	0	0	1	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0008	534	1	1	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf33_chr7_148585766_148620860	0/0	c0009	534	1	1	0	0	0	0	copy fasta	C7orf33	chr7	148585766	148620860
C7orf50_chr7_992006_1143247	1/1	c0001	585	305	80	68	110	14	31	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0002	585	14	14	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0003	585	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0004	585	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0005	585	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0006	585	1	1	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0007	585	1	1	0	0	0	0	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0008	585	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf50_chr7_992006_1143247	0/0	c0009	585	1	0	0	0	0	1	copy fasta	C7orf50	chr7	992006	1143247
C7orf57_chr7_48030543_48066297	0/0	c0001	888	147	25	30	64	12	16	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/1	c0002	888	146	36	29	67	3	10	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	1/0	c0003	888	100	25	9	53	1	11	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	c0004	888	5	5	0	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	c0005	888	3	0	0	3	0	0	copy fasta	C7orf57	chr7	48030543	48066297