JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C7orf57_chr7_48030543_48066297	0/0	c0006	888	1	1	0	0	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	c0007	888	1	0	0	1	0	0	copy fasta	C7orf57	chr7	48030543	48066297
C7orf57_chr7_48030543_48066297	0/0	c0008	888	1	0	0	0	0	1	copy fasta	C7orf57	chr7	48030543	48066297
C8A_chr1_56849797_56923223	1/0	c0001	1755	180	45	31	86	7	10	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/1	c0002	1755	99	5	12	54	6	21	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0003	1755	20	12	5	1	0	2	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0004	1755	17	3	1	10	1	2	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0005	1755	9	4	0	5	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0006	1755	9	9	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0007	1755	4	0	0	0	0	4	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0008	1755	4	0	4	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0009	1755	3	3	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0010	1755	3	3	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0011	1755	2	0	0	2	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0012	1755	2	0	2	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0013	1755	2	2	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0014	1755	2	0	0	2	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0015	1755	1	0	0	1	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0016	1755	1	0	0	0	0	1	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0017	1755	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0018	1755	1	0	0	1	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0019	1755	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0020	1755	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0021	1755	1	1	0	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0022	1755	1	0	1	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0023	1755	1	0	1	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8A_chr1_56849797_56923223	0/0	c0024	1755	1	0	1	0	0	0	copy fasta	C8A	chr1	56849797	56923223
C8B_chr1_56924207_56971015	0/1	c0001	1776	376	88	67	165	16	39	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0002	1776	8	5	2	0	0	1	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	1/0	c0003	1776	6	0	2	0	0	3	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0004	1776	4	3	1	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0005	1776	2	0	0	0	0	2	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0006	1776	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0007	1776	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0008	1776	1	0	0	0	0	1	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0009	1776	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0010	1776	1	0	0	1	0	0	copy fasta	C8B	chr1	56924207	56971015
C8B_chr1_56924207_56971015	0/0	c0011	1776	1	1	0	0	0	0	copy fasta	C8B	chr1	56924207	56971015
C8G_chr9_136940243_136951975	0/1	c0001	609	251	62	37	120	4	27	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0002	609	112	7	38	43	9	15	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0003	609	27	8	6	5	4	4	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	1/0	c0004	609	11	7	1	0	1	1	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0005	609	6	6	0	0	0	0	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0006	609	4	4	0	0	0	0	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0007	609	1	0	0	0	0	1	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0008	609	1	0	0	1	0	0	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0009	609	1	0	0	1	0	0	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0010	609	1	0	0	1	0	0	copy fasta	C8G	chr9	136940243	136951975
C8G_chr9_136940243_136951975	0/0	c0011	609	1	0	0	1	0	0	copy fasta	C8G	chr9	136940243	136951975
C8orf33_chr8_145047467_145061030	1/1	c0001	690	396	85	64	194	15	36	copy fasta	C8orf33	chr8	145047467	145061030