JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C8orf33_chr8_145047467_145061030	0/0	c0002	690	5	5	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	c0003	690	2	0	0	2	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	c0004	690	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	c0005	690	1	1	0	0	0	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf33_chr8_145047467_145061030	0/0	c0006	690	1	0	0	0	1	0	copy fasta	C8orf33	chr8	145047467	145061030
C8orf34_chr8_68325955_68824023	1/1	c0001	1617	67	27	18	11	1	8	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0002	1617	19	11	4	2	1	1	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0003	1617	15	9	1	4	0	1	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0004	1617	7	3	3	0	0	1	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0005	1617	4	4	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0006	1603	3	3	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0007	1617	2	2	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0008	1603	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0009	1617	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0010	1617	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0011	1617	1	0	0	0	0	1	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0012	1617	1	0	1	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0013	1617	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0014	1617	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0015	1617	1	0	1	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0016	1617	1	0	0	1	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0017	1617	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf34_chr8_68325955_68824023	0/0	c0018	1617	1	1	0	0	0	0	copy fasta	C8orf34	chr8	68325955	68824023
C8orf48_chr8_13561869_13573288	0/1	c0001	960	354	53	57	197	14	32	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0002	960	42	12	11	5	0	14	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0003	960	21	1	2	18	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0004	960	8	8	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	1/0	c0005	960	7	6	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0006	960	5	4	1	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0007	960	3	3	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0008	960	2	0	2	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0009	960	2	0	0	2	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0010	960	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0011	960	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0012	960	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0013	960	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0014	960	1	0	1	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0015	960	1	1	0	0	0	0	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0016	960	1	0	0	0	0	1	copy fasta	C8orf48	chr8	13561869	13573288
C8orf48_chr8_13561869_13573288	0/0	c0017	960	1	0	0	0	0	1	copy fasta	C8orf48	chr8	13561869	13573288
C8orf58_chr8_22594599_22609142	1/1	c0001	1098	289	67	57	107	15	41	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0002	1098	9	1	0	8	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0003	1098	8	7	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0004	1098	8	6	2	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0005	1098	4	4	0	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0006	1098	3	0	1	1	1	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0007	1098	2	2	0	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0008	1098	1	0	0	1	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0009	1098	1	0	0	0	0	1	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0010	1098	1	0	0	1	0	0	copy fasta	C8orf58	chr8	22594599	22609142