JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C8orf58_chr8_22594599_22609142	0/0	c0011	1098	1	0	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0012	1098	1	0	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0013	1098	1	0	0	1	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0014	1098	1	0	0	1	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0015	1098	1	1	0	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf58_chr8_22594599_22609142	0/0	c0016	1098	1	0	1	0	0	0	copy fasta	C8orf58	chr8	22594599	22609142
C8orf74_chr8_10667628_10705590	0/1	c0001	885	284	26	65	138	15	39	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0002	885	38	29	0	8	0	1	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0003	885	36	23	0	8	0	5	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0004	885	30	0	3	27	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0005	885	11	10	0	0	0	1	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	1/0	c0006	885	4	0	0	3	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0007	885	4	0	0	4	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0008	885	4	3	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0009	885	2	0	1	0	1	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0010	885	2	2	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0011	885	2	0	0	2	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0012	885	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0013	885	1	0	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0014	885	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0015	885	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0016	885	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0017	885	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0018	885	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0019	885	1	0	0	1	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0020	885	1	0	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0021	885	1	0	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0022	885	1	1	0	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0023	885	1	0	0	1	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf74_chr8_10667628_10705590	0/0	c0024	885	1	0	1	0	0	0	copy fasta	C8orf74	chr8	10667628	10705590
C8orf76_chr8_123214967_123246377	1/1	c0001	1143	215	76	48	52	10	27	copy fasta	C8orf76	chr8	123214967	123246377
C8orf76_chr8_123214967_123246377	0/0	c0002	1143	14	14	0	0	0	0	copy fasta	C8orf76	chr8	123214967	123246377
C8orf76_chr8_123214967_123246377	0/0	c0003	1143	1	0	0	0	0	1	copy fasta	C8orf76	chr8	123214967	123246377
C8orf82_chr8_144520733_144534111	1/0	c0001	651	184	31	32	95	8	17	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/1	c0002	651	153	8	44	70	8	22	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	c0003	651	33	32	0	0	0	1	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	c0004	651	25	23	2	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	c0005	651	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	c0006	651	1	0	0	1	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf82_chr8_144520733_144534111	0/0	c0007	651	1	1	0	0	0	0	copy fasta	C8orf82	chr8	144520733	144534111
C8orf88_chr8_90953471_90990238	1/1	c0001	354	365	90	64	159	14	36	copy fasta	C8orf88	chr8	90953471	90990238
C8orf88_chr8_90953471_90990238	0/0	c0002	354	2	0	0	2	0	0	copy fasta	C8orf88	chr8	90953471	90990238
C8orf88_chr8_90953471_90990238	0/0	c0003	354	1	0	0	1	0	0	copy fasta	C8orf88	chr8	90953471	90990238
C8orf89_chr8_73236331_73264530	1/0	c0001	486	183	33	32	88	4	25	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/1	c0002	486	146	58	20	54	0	13	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	c0003	486	11	0	0	11	0	0	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	c0004	486	3	3	0	0	0	0	copy fasta	C8orf89	chr8	73236331	73264530
C8orf89_chr8_73236331_73264530	0/0	c0005	486	1	0	0	1	0	0	copy fasta	C8orf89	chr8	73236331	73264530
C8orf90_chr8_141509671_141523729	1/1	c0001	579	351	93	79	125	11	41	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0002	579	84	3	3	77	0	1	copy fasta	C8orf90	chr8	141509671	141523729