JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C8orf90_chr8_141509671_141523729	0/0	c0003	579	5	0	0	5	0	0	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0004	579	3	0	0	3	0	0	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0005	579	1	0	0	0	1	0	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0006	579	1	0	0	0	0	1	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0007	579	1	1	0	0	0	0	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0008	579	1	1	0	0	0	0	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0009	672	1	0	0	0	0	1	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0010	579	1	0	0	0	0	1	copy fasta	C8orf90	chr8	141509671	141523729
C8orf90_chr8_141509671_141523729	0/0	c0011	579	1	0	0	0	0	1	copy fasta	C8orf90	chr8	141509671	141523729
C9_chr5_39279140_39369495	1/0	c0001	1680	264	48	50	133	9	23	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/1	c0002	1680	84	21	24	20	3	15	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0003	1680	7	7	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0004	1680	7	7	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0005	1680	4	3	1	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0006	1680	4	4	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0007	1680	4	0	0	4	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0008	1680	3	2	1	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0009	1680	3	1	2	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0010	1680	2	0	0	2	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0011	1680	2	2	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0012	1680	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0013	1680	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0014	1680	1	0	0	1	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0015	1680	1	0	0	0	0	1	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0016	1680	1	0	0	1	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0017	1680	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0018	1680	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0019	1680	1	0	0	1	0	0	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0020	1680	1	0	0	0	0	1	copy fasta	C9	chr5	39279140	39369495
C9_chr5_39279140_39369495	0/0	c0021	1680	1	1	0	0	0	0	copy fasta	C9	chr5	39279140	39369495
C9orf131_chr9_35037240_35050986	0/0	c0001	3240	158	34	43	43	9	29	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	1/1	c0002	3240	133	31	13	74	4	9	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0003	3240	88	9	7	69	0	3	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0004	3240	9	9	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0005	3240	7	2	3	0	1	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0006	3240	6	0	0	6	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0007	3240	3	3	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0008	3240	2	2	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0009	3240	2	0	0	2	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0010	3240	2	0	0	2	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0011	3240	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0012	3240	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0013	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0014	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0015	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0016	3240	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0017	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0018	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0019	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0020	3240	1	0	1	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986