JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C9orf131_chr9_35037240_35050986	0/0	c0021	3240	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0022	3240	1	0	1	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0023	3240	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0024	3240	1	0	0	0	0	1	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0025	3240	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0026	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0027	3240	1	1	0	0	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf131_chr9_35037240_35050986	0/0	c0028	3240	1	0	0	1	0	0	copy fasta	C9orf131	chr9	35037240	35050986
C9orf152_chr9_110194561_110213159	0/1	c0001	720	327	38	56	183	12	37	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	c0002	720	115	44	18	40	5	8	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	c0003	720	12	10	2	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	1/0	c0004	720	5	0	2	0	1	1	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	c0005	720	4	0	0	4	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	c0006	720	2	2	0	0	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf152_chr9_110194561_110213159	0/0	c0007	720	1	0	0	1	0	0	copy fasta	C9orf152	chr9	110194561	110213159
C9orf153_chr9_86215265_86264657	1/1	c0001	288	364	72	70	158	18	44	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	c0002	288	18	16	2	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf153_chr9_86215265_86264657	0/0	c0003	288	2	2	0	0	0	0	copy fasta	C9orf153	chr9	86215265	86264657
C9orf24_chr9_34374019_34402810	1/0	c0001	789	240	57	33	123	6	20	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/1	c0002	789	143	26	25	72	5	14	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	c0003	789	43	6	12	17	2	6	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	c0004	789	19	0	6	6	1	6	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	c0005	789	2	0	2	0	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	c0006	789	1	1	0	0	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	c0007	789	1	0	0	1	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf24_chr9_34374019_34402810	0/0	c0008	789	1	0	0	1	0	0	copy fasta	C9orf24	chr9	34374019	34402810
C9orf40_chr9_74941583_74957912	1/1	c0001	585	257	53	47	115	11	29	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	c0002	585	149	26	23	76	7	17	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	c0003	585	2	2	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	c0004	585	1	1	0	0	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf40_chr9_74941583_74957912	0/0	c0005	585	1	0	0	1	0	0	copy fasta	C9orf40	chr9	74941583	74957912
C9orf43_chr9_113405747_113434690	1/1	c0001	1386	266	78	46	102	12	26	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0002	1386	18	4	9	0	3	2	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0003	1389	7	0	1	3	1	2	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0004	1386	6	6	0	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0005	1386	3	0	1	0	0	2	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0006	1386	2	0	1	1	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0007	1386	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0008	1386	1	0	1	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0009	1386	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0010	1386	1	0	1	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0011	1389	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0012	1386	1	1	0	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0013	1386	1	1	0	0	0	0	copy fasta	C9orf43	chr9	113405747	113434690
C9orf43_chr9_113405747_113434690	0/0	c0014	1386	1	0	0	0	0	1	copy fasta	C9orf43	chr9	113405747	113434690
C9orf50_chr9_129607225_129626101	1/1	c0001	1296	149	24	29	73	4	17	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0002	1296	116	39	20	32	7	18	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0003	1296	64	1	13	41	1	8	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0004	1296	18	0	0	16	0	2	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0005	1296	13	2	3	6	0	2	copy fasta	C9orf50	chr9	129607225	129626101