JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
C9orf50_chr9_129607225_129626101	0/0	c0006	1296	11	7	1	3	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0007	1296	6	6	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0008	1296	5	4	1	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0009	1296	5	0	0	5	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0010	1296	4	4	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0011	1296	3	0	2	0	1	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0012	1296	2	2	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0013	1296	2	0	2	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0014	1296	2	2	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0015	1296	1	0	0	1	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0016	1296	1	1	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0017	1296	1	1	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0018	1296	1	1	0	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0019	1296	1	0	0	1	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0020	1296	1	0	0	0	1	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0021	1296	1	0	1	0	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0022	1296	1	0	0	1	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0023	1296	1	0	0	1	0	0	copy fasta	C9orf50	chr9	129607225	129626101
C9orf50_chr9_129607225_129626101	0/0	c0024	1296	1	0	0	0	0	1	copy fasta	C9orf50	chr9	129607225	129626101
C9orf57_chr9_72046376_72065613	1/1	c0001	420	358	72	55	193	7	29	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	c0002	420	80	16	21	23	9	11	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	c0003	420	7	7	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	c0004	420	2	2	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	c0005	420	1	0	1	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	c0006	420	1	0	1	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf57_chr9_72046376_72065613	0/0	c0007	396	1	1	0	0	0	0	copy fasta	C9orf57	chr9	72046376	72065613
C9orf72_chr9_27541546_27578481	1/1	c0001	1446	311	73	59	138	7	32	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0002	1446	102	11	15	62	1	13	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0003	1446	19	7	8	0	2	2	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0004	1446	1	1	0	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0005	1446	1	0	0	1	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0006	1446	1	0	1	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0007	1446	1	0	1	0	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0008	1446	1	0	0	0	0	1	copy fasta	C9orf72	chr9	27541546	27578481
C9orf72_chr9_27541546_27578481	0/0	c0009	1446	1	0	0	1	0	0	copy fasta	C9orf72	chr9	27541546	27578481
C9orf78_chr9_129822290_129840275	1/1	c0001	870	245	66	47	91	9	30	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	c0002	870	115	14	21	56	9	15	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	c0003	870	15	0	0	15	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	c0004	870	8	8	0	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	c0005	870	1	0	0	0	0	1	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	c0006	870	1	1	0	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf78_chr9_129822290_129840275	0/0	c0007	870	1	1	0	0	0	0	copy fasta	C9orf78	chr9	129822290	129840275
C9orf85_chr9_71906639_71978457	1/1	c0001	474	244	57	56	89	18	22	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	c0002	474	3	3	0	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	c0003	474	1	0	0	1	0	0	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	c0004	474	1	0	1	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
C9orf85_chr9_71906639_71978457	0/0	c0005	474	1	0	1	0	0	0	copy fasta	C9orf85	chr9	71906639	71978457
CA10_chr17_51625320_52163714	1/0	c0001	987	118	56	18	28	1	14	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/1	c0002	987	37	10	11	10	1	4	copy fasta	CA10	chr17	51625320	52163714
CA10_chr17_51625320_52163714	0/0	c0003	987	1	0	1	0	0	0	copy fasta	CA10	chr17	51625320	52163714