JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CA11_chr19_48632946_48651187	1/1	c0001	987	391	96	72	173	12	36	copy fasta	CA11	chr19	48632946	48651187
CA11_chr19_48632946_48651187	0/0	c0002	987	1	0	0	1	0	0	copy fasta	CA11	chr19	48632946	48651187
CA12_chr15_63316378_63386846	1/1	c0001	1065	347	86	51	161	6	41	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	c0002	1065	2	2	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	c0003	1065	2	2	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	c0004	1065	1	0	0	0	0	1	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	c0005	1065	1	0	0	1	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	c0007	1065	1	0	1	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA12_chr15_63316378_63386846	0/0	c0008	1065	1	1	0	0	0	0	copy fasta	CA12	chr15	63316378	63386846
CA13_chr8_85240458_85289073	1/1	c0001	789	346	91	62	146	8	37	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	c0002	789	3	0	2	0	0	1	copy fasta	CA13	chr8	85240458	85289073
CA13_chr8_85240458_85289073	0/0	c0003	789	1	1	0	0	0	0	copy fasta	CA13	chr8	85240458	85289073
CA14_chr1_150252774_150270078	1/1	c0001	1014	382	84	65	177	13	41	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0002	1014	14	1	6	0	1	6	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0003	1014	6	6	0	0	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0004	1014	5	0	0	5	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0005	1014	3	0	0	3	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0006	1014	1	0	0	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0007	1014	1	1	0	0	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0008	1014	1	0	0	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0009	1014	1	0	1	0	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0010	1014	1	0	0	1	0	0	copy fasta	CA14	chr1	150252774	150270078
CA14_chr1_150252774_150270078	0/0	c0011	1014	1	0	0	0	0	1	copy fasta	CA14	chr1	150252774	150270078
CA1_chr8_85322608_85383113	1/1	c0001	786	290	62	55	126	8	37	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0002	786	10	10	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0003	786	7	7	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0004	786	6	5	1	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0005	786	6	6	0	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0006	786	1	0	0	0	0	1	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0007	786	1	0	0	1	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0008	786	1	0	0	1	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0009	786	1	0	1	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA1_chr8_85322608_85383113	0/0	c0010	786	1	0	1	0	0	0	copy fasta	CA1	chr8	85322608	85383113
CA2_chr8_85459007_85486493	0/0	c0001	783	182	60	32	68	9	13	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	1/1	c0002	783	136	19	22	69	3	21	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	c0003	783	11	9	2	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	c0004	783	2	0	2	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	c0005	783	1	1	0	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	c0006	783	1	0	0	0	0	1	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	c0007	783	1	0	0	0	0	1	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	c0008	783	1	0	0	1	0	0	copy fasta	CA2	chr8	85459007	85486493
CA2_chr8_85459007_85486493	0/0	c0009	783	1	1	0	0	0	0	copy fasta	CA2	chr8	85459007	85486493
CA3_chr8_85433859_85454040	1/0	c0001	783	208	62	29	87	3	26	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/1	c0002	783	148	20	32	69	12	14	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	c0003	783	2	2	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	c0004	783	2	0	0	2	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	c0005	783	1	1	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	c0006	783	1	0	0	0	1	0	copy fasta	CA3	chr8	85433859	85454040
CA3_chr8_85433859_85454040	0/0	c0007	783	1	1	0	0	0	0	copy fasta	CA3	chr8	85433859	85454040