JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CA3_chr8_85433859_85454040	0/0	c0008	783	1	0	1	0	0	0	copy fasta	CA3	chr8	85433859	85454040
CA4_chr17_60144973_60164546	1/1	c0001	939	359	83	65	159	14	36	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	c0002	939	8	6	2	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	c0003	939	4	4	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	c0004	939	3	0	0	3	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	c0005	939	2	2	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	c0006	939	2	2	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	c0007	939	1	1	0	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA4_chr17_60144973_60164546	0/0	c0008	939	1	0	1	0	0	0	copy fasta	CA4	chr17	60144973	60164546
CA5A_chr16_87883013_87941529	1/1	c0001	918	291	61	67	119	11	31	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0002	918	48	4	2	24	2	16	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0003	918	18	6	4	4	1	3	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0004	918	13	0	2	11	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0005	918	11	11	0	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0006	918	8	7	1	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0007	918	2	0	0	2	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0008	918	2	2	0	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0009	918	1	1	0	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0010	918	1	1	0	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0011	918	1	0	1	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0012	918	1	1	0	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0013	918	1	0	0	0	1	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0014	918	1	0	1	0	0	0	copy fasta	CA5A	chr16	87883013	87941529
CA5A_chr16_87883013_87941529	0/0	c0015	918	1	0	0	0	1	0	copy fasta	CA5A	chr16	87883013	87941529
CA5B_chrX_15733270_15793411	1/1	c0001	954	171	51	27	62	7	22	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	c0002	954	99	16	16	56	4	7	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	c0003	954	1	1	0	0	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	c0004	954	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	c0005	954	1	0	0	0	0	1	copy fasta	CA5B	chrX	15733270	15793411
CA5B_chrX_15733270_15793411	0/0	c0006	954	1	0	0	1	0	0	copy fasta	CA5B	chrX	15733270	15793411
CA6_chr1_8940868_8980092	1/0	c0001	927	104	15	23	46	6	13	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/1	c0002	927	93	2	19	60	2	9	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0003	927	77	8	23	33	6	7	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0004	927	24	1	1	16	0	6	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0005	927	24	0	2	19	1	2	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0006	927	22	1	7	10	2	2	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0007	927	21	0	3	17	0	1	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0008	927	18	14	0	0	1	3	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0009	927	7	7	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0010	927	7	7	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0011	927	6	6	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0012	927	5	5	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0013	927	4	4	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0014	927	4	4	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0015	927	4	4	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0016	927	3	3	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0017	927	3	3	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0018	927	3	0	0	1	0	2	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0019	927	3	2	1	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0020	927	2	2	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092