JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CA6_chr1_8940868_8980092	0/0	c0021	927	2	2	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0022	927	2	0	0	2	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0023	927	2	2	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0024	927	2	2	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0025	927	1	1	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0026	927	1	1	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0027	927	1	1	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0028	927	1	1	0	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0029	927	1	0	0	1	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0030	927	1	0	0	0	0	1	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0031	927	1	0	0	1	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0032	927	1	0	1	0	0	0	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0033	778	1	0	0	0	0	1	copy fasta	CA6	chr1	8940868	8980092
CA6_chr1_8940868_8980092	0/0	c0034	927	1	0	0	0	0	1	copy fasta	CA6	chr1	8940868	8980092
CA7_chr16_66839414_66859147	1/1	c0001	795	390	92	68	175	14	39	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	c0002	795	1	0	0	0	0	1	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	c0003	795	1	0	0	1	0	0	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	c0004	795	1	1	0	0	0	0	copy fasta	CA7	chr16	66839414	66859147
CA7_chr16_66839414_66859147	0/0	c0005	795	1	1	0	0	0	0	copy fasta	CA7	chr16	66839414	66859147
CA8_chr8_60180412_60286400	1/0	c0001	873	196	15	38	112	7	23	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/1	c0002	873	120	46	23	30	7	13	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	c0003	873	21	20	1	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	c0004	873	3	3	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	c0005	873	3	3	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA8_chr8_60180412_60286400	0/0	c0006	873	1	1	0	0	0	0	copy fasta	CA8	chr8	60180412	60286400
CA9_chr9_35668928_35686159	1/0	c0001	1380	189	43	36	83	7	19	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/1	c0002	1380	163	8	31	90	8	25	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0003	1380	36	32	4	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0004	1362	27	2	1	21	0	3	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0005	1380	13	1	4	6	1	1	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0006	1362	5	5	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0007	1380	2	0	2	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0008	1362	2	2	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0009	1380	1	0	1	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0010	1380	1	0	1	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0011	1380	1	0	1	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0012	1380	1	0	0	0	0	1	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0013	1380	1	0	0	0	0	1	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0014	1362	1	1	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0015	1362	1	1	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0016	1380	1	1	0	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CA9_chr9_35668928_35686159	0/0	c0017	1380	1	0	1	0	0	0	copy fasta	CA9	chr9	35668928	35686159
CAAP1_chr9_26835685_26897802	1/1	c0001	1086	234	55	52	77	18	30	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0002	1086	110	9	16	78	0	7	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0003	1086	19	17	2	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0004	1086	3	3	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0005	1086	1	0	0	1	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0006	1086	1	1	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0007	1086	1	1	0	0	0	0	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0008	1086	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802