Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ACCSL_chr11_44042981_44064977	0/0	c0003	1707	14	0	0	14	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0004	1707	8	8	0	0	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0005	1707	5	1	2	1	0	1	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0006	1707	4	4	0	0	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0007	1707	3	0	0	3	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0008	1707	2	0	0	2	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0009	1707	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0010	1707	1	1	0	0	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0011	1707	1	1	0	0	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0012	1707	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0013	1707	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCSL_chr11_44042981_44064977	0/0	c0014	1707	1	0	0	1	0	0	copy fasta	ACCSL	chr11	44042981	44064977
ACCS_chr11_44061270_44089237	1/0	c0001	1506	197	16	44	103	4	29	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0002	1506	72	16	8	41	3	4	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0003	1506	62	13	10	30	3	6	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/1	c0004	1506	48	11	7	23	4	2	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0005	1506	30	20	1	6	0	3	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0006	1506	8	6	0	2	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0007	1506	4	4	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0008	1506	3	2	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0009	1506	3	3	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0010	1506	2	2	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0011	1506	2	0	0	2	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0012	1506	1	1	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0013	1506	1	0	0	0	1	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0014	1506	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0015	1506	1	0	0	1	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0016	1506	1	1	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0017	1506	1	0	0	0	1	0	copy fasta	ACCS	chr11	44061270	44089237
ACCS_chr11_44061270_44089237	0/0	c0018	1506	1	1	0	0	0	0	copy fasta	ACCS	chr11	44061270	44089237
ACD_chr16_67652512_67665260	0/0	c0001	1377	146	72	31	22	4	17	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	1/1	c0002	1377	107	3	20	61	6	15	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0003	1377	4	4	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0004	1377	3	3	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0005	1377	1	1	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0006	1377	1	0	0	1	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0007	1377	1	1	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0008	1377	1	1	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0009	1377	1	0	0	1	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0010	1377	1	1	0	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0011	1377	1	0	0	1	0	0	copy fasta	ACD	chr16	67652512	67665260
ACD_chr16_67652512_67665260	0/0	c0012	1377	1	0	1	0	0	0	copy fasta	ACD	chr16	67652512	67665260
ACE2_chrX_15556033_15605960	1/0	c0001	2418	256	60	52	110	9	24	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/1	c0002	2418	3	0	2	0	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	c0003	2418	2	1	1	0	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	c0004	2418	1	0	1	0	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	c0005	2415	1	0	0	1	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACE2_chrX_15556033_15605960	0/0	c0006	2418	1	1	0	0	0	0	copy fasta	ACE2	chrX	15556033	15605960
ACER1_chr19_6301142_6338612	1/1	c0001	795	269	77	53	97	9	31	copy fasta	ACER1	chr19	6301142	6338612
ACER1_chr19_6301142_6338612	0/0	c0002	795	81	0	10	63	2	6	copy fasta	ACER1	chr19	6301142	6338612