JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CAAP1_chr9_26835685_26897802	0/0	c0009	1086	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802
CAAP1_chr9_26835685_26897802	0/0	c0010	1086	1	0	0	0	0	1	copy fasta	CAAP1	chr9	26835685	26897802
CAB39L_chr13_49303650_49449064	0/1	c0001	1014	165	67	35	28	5	29	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	1/0	c0002	1014	157	16	33	87	5	15	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	c0003	1048	1	0	0	1	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39L_chr13_49303650_49449064	0/0	c0004	1014	1	1	0	0	0	0	copy fasta	CAB39L	chr13	49303650	49449064
CAB39_chr2_230707842_230826075	1/1	c0001	1026	335	83	68	138	14	30	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	c0002	1026	4	0	0	4	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	c0003	1026	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	c0004	1026	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CAB39_chr2_230707842_230826075	0/0	c0005	1026	1	1	0	0	0	0	copy fasta	CAB39	chr2	230707842	230826075
CABCOCO1_chr10_61657929_61771766	0/1	c0001	906	281	70	51	115	14	30	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0002	906	59	11	8	28	1	11	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0003	906	18	0	5	12	1	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0004	906	6	0	0	6	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	1/0	c0005	891	4	3	0	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0006	906	2	1	1	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0007	906	1	0	0	0	0	1	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0008	906	1	0	1	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0009	906	1	1	0	0	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABCOCO1_chr10_61657929_61771766	0/0	c0010	906	1	0	0	1	0	0	copy fasta	CABCOCO1	chr10	61657929	61771766
CABIN1_chr22_24006304_24183628	1/1	c0001	6663	123	47	11	50	5	8	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0002	6663	31	0	1	26	1	3	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0003	6663	22	1	5	15	0	1	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0004	6663	18	1	0	17	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0005	6663	11	5	6	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0006	6663	5	0	0	5	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0007	6663	5	5	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0008	6663	5	1	0	0	0	4	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0009	6663	5	0	0	5	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0010	6663	4	0	0	2	0	2	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0011	6663	4	0	0	4	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0012	6663	3	2	1	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0013	6663	3	3	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0014	6663	3	0	0	0	0	3	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0015	6663	2	2	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0016	6663	2	0	0	2	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0017	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0018	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0019	6663	1	0	1	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0020	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0021	6650	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0022	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0023	6663	1	0	0	0	0	1	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0024	6663	1	0	1	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0025	6663	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0026	6663	1	0	0	0	0	1	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0027	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0028	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0029	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628