JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CABIN1_chr22_24006304_24183628	0/0	c0030	6663	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0031	6663	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0032	6663	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0033	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0034	6663	1	1	0	0	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0035	6663	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0036	6663	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0037	6663	1	0	0	1	0	0	copy fasta	CABIN1	chr22	24006304	24183628
CABIN1_chr22_24006304_24183628	0/0	c0038	6663	1	0	0	0	0	1	copy fasta	CABIN1	chr22	24006304	24183628
CABLES1_chr18_23130485_23265470	1/0	c0001	1902	194	51	42	76	5	19	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/1	c0002	1893	55	12	6	27	2	7	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0003	1902	8	3	1	4	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0004	1902	4	2	2	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0005	1893	4	3	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0006	1902	2	2	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0007	1902	2	1	0	0	1	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0008	1902	2	0	2	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0009	1902	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0010	1902	1	0	0	1	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0011	1902	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0012	1902	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0013	1893	1	0	1	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0014	1902	1	0	0	0	0	1	copy fasta	CABLES1	chr18	23130485	23265470
CABLES1_chr18_23130485_23265470	0/0	c0015	1902	1	1	0	0	0	0	copy fasta	CABLES1	chr18	23130485	23265470
CABLES2_chr20_62383634_62412285	0/1	c0001	1437	165	20	23	97	8	16	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0002	1437	51	24	17	6	0	4	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	1/0	c0003	1437	51	1	5	39	0	5	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0004	1437	28	16	7	0	3	2	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0005	1437	26	10	11	0	1	4	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0006	1437	23	0	6	13	2	2	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0007	1437	19	5	5	1	0	8	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0008	1437	16	13	3	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0009	1438	5	1	1	2	0	1	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0010	1437	3	2	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0011	1437	2	2	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0012	1438	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0013	1438	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0014	1438	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0015	1437	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0016	1437	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0017	1437	1	1	0	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0018	1438	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0019	1437	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0020	1437	1	0	0	1	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0021	1437	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABLES2_chr20_62383634_62412285	0/0	c0022	1437	1	0	1	0	0	0	copy fasta	CABLES2	chr20	62383634	62412285
CABP1_chr12_120635626_120672324	1/1	c0001	1113	411	92	72	183	18	44	copy fasta	CABP1	chr12	120635626	120672324
CABP1_chr12_120635626_120672324	0/0	c0002	1113	3	2	1	0	0	0	copy fasta	CABP1	chr12	120635626	120672324
CABP1_chr12_120635626_120672324	0/0	c0003	1113	2	0	2	0	0	0	copy fasta	CABP1	chr12	120635626	120672324
CABP1_chr12_120635626_120672324	0/0	c0004	1113	1	0	0	1	0	0	copy fasta	CABP1	chr12	120635626	120672324